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Sample GSM16438 Query DataSets for GSM16438
Status Public on May 10, 2004
Title GC2_SARB32_LT2_2D722_2
Sample type genomic
 
Channel 1
Source name SARB32 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison SARB32/LT2
User - PCheng
Date_of_Scan = Wed Apr 23 15:05:03 2003
 
Submission date Feb 04, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2300 22740 4215.014648 52.220589 2623.080566 184.785141 180.010986 20500 19.889948 0.954314 0.93 0.994453 22.810355 0.854526 4381.286621 18.779411 2837.599854 65.640099 178.055252 21300 19.889948 0.94707 0.932343 0.997887 66.747106 0.858081 1 1 1 1 1 1 1 1 1 1 1 1 1 4162.794059 4362.50721 0.017957268 0.023982349 0.748770163 -0.12565147
2 2540 22760 792.430237 43.676472 637.033203 152.162857 180.187729 17200 23.842329 0.942801 0.982414 0.995811 5.207777 0.854204 822.88269 45.529411 675.451111 138.874954 178.946869 17900 23.842329 0.937104 0.981194 0.995995 5.92535 0.85646 1 1 1 1 1 1 1 1 1 1 1 1 1 748.753765 777.353279 0.003229939 0.004273404 0.755823422 -0.121579654
3 2790 22750 11856.63281 43.617645 9650.354492 113.845673 181.244553 21800 15.293344 0.966541 0.798836 0.996834 104.146539 0.852283 10474.16699 74.25 8109.661621 173.103912 182.992371 21000 15.293344 0.945248 0.822144 0.995155 60.507974 0.849105 1 1 1 1 1 1 1 1 1 1 1 1 1 11813.01517 10399.91699 0.050958436 0.05717227 0.891313841 -0.04996935
4 3050 22750 3638.265381 42.720589 2583.124023 124.853447 178.41243 21100 23.025644 0.948923 0.935883 0.996208 29.140288 0.857432 3370.884033 32.705883 2399.803711 97.005623 182.64415 20700 23.025644 0.951371 0.939766 0.997429 34.749367 0.849738 1 1 1 1 1 1 1 1 1 1 1 1 1 3595.544792 3338.17815 0.015510294 0.018351226 0.845191178 -0.073045045
5 3320 22740 5786.625977 52.264706 3930.701416 129.811646 180.89296 22200 39.8522 0.959126 0.904701 0.996002 44.577094 0.852922 4673.916504 59.867645 2999.85083 166.036942 181.595459 21500 39.8522 0.944749 0.924118 0.995537 28.149859 0.851645 1 1 1 1 1 1 1 1 1 1 1 1 1 5734.361271 4614.048859 0.024736621 0.025365169 0.975220054 -0.010897377
6 3550 22740 4729.442383 78.823532 3172.019531 208.643021 182.295258 23500 19.889948 0.958046 0.924622 0.994148 22.667628 0.850372 3752.149658 87.352943 2426.80957 211.795502 183.339935 22700 19.889948 0.938764 0.938568 0.995049 17.715908 0.848473 1 1 1 1 1 1 1 1 1 1 1 1 1 4650.618851 3664.796715 0.020061624 0.020146771 0.995773627 -0.00183938
7 3780 22750 4190.169434 59.720589 3840.174805 145.175644 184.895889 22400 11.72998 0.944568 0.906517 0.995705 28.862758 0.845644 4008.264893 48.191177 3300.114746 127.289925 182.12056 20000 11.72998 0.939782 0.912354 0.997421 31.489255 0.85069 1 1 1 1 1 1 1 1 1 1 1 1 1 4130.448845 3960.073716 0.017817738 0.02177002 0.81845299 -0.087006261
8 4040 22740 5277.759766 63.720589 4304.274414 153.503845 181.244553 20000 9.965744 0.932815 0.902954 0.995949 34.381938 0.852283 4224.659668 42.411766 3520.52832 113.493141 184.033096 19400 9.965744 0.951263 0.916656 0.99617 37.223921 0.847213 1 1 1 1 1 1 1 1 1 1 1 1 1 5214.039177 4182.247902 0.02249208 0.022991396 0.978282489 -0.00953572
9 4290 22740 4785.291016 55.117645 4593.313477 116.934418 187.120529 21300 9.965744 0.953848 0.893677 0.996399 40.922862 0.841599 3934.130859 62.176472 3583.075195 191.528488 187.120529 19100 9.965744 0.957966 0.914993 0.993332 20.540709 0.841599 1 1 1 1 1 1 1 1 1 1 1 1 1 4730.173371 3871.954387 0.020404802 0.021285595 0.958620226 -0.018353412
10 4530 22740 2844.504883 91.235291 2907.398926 185.888763 186.268051 21000 1.73842 0.95294 0.927628 0.994484 15.302188 0.843149 1731.815186 60.514706 1707.85144 152.945358 184.205978 18400 1.73842 0.943865 0.951302 0.994743 11.323097 0.846898 1 1 1 1 1 1 1 1 1 1 1 1 1 2753.269592 1671.30048 0.011876926 0.00918777 1.292688729 0.111493962
11 4780 22740 3417.283203 89.117645 3174.905029 212.382965 190.659378 21900 1.73842 0.97239 0.920738 0.993309 16.090194 0.835165 2054.4646 63.132355 1753.13916 149.05542 185.411636 19800 1.73842 0.949088 0.955711 0.996361 13.783226 0.844706 1 1 1 1 1 1 1 1 1 1 1 1 1 3328.165558 1991.332245 0.014356886 0.010947105 1.311477842 0.117760958
12 5040 22740 2039.351685 56.044117 1634.461548 117.245941 186.438858 23600 9.965744 0.959022 0.951744 0.996986 17.393793 0.842838 2471.438477 59.264706 2195.964844 162.164978 181.42009 22800 9.965744 0.919242 0.937073 0.994438 15.240273 0.851963 1 1 1 1 1 1 1 1 1 1 1 1 1 1983.307568 2412.173771 0.0085555 0.01326063 0.645180511 -0.19031876
13 5290 22740 9656.080078 34.5 7611.378906 98.605125 185.583237 23800 9.965744 0.967393 0.834114 0.996979 97.926756 0.844394 6388.713867 78.411766 4531.423828 177.696732 180.364288 22000 9.965744 0.947896 0.889099 0.994545 35.952906 0.853883 1 1 1 1 1 1 1 1 1 1 1 1 1 9621.580078 6310.302101 0.041505125 0.034690113 1.196454009 0.077896009
14 5540 22730 3310.097656 41.573528 2668.790039 102.490967 187.460449 20500 12.835332 0.955479 0.935394 0.996948 32.296482 0.840981 1921.990112 66.823532 1525.578247 118.642441 181.77066 20200 12.835332 0.952588 0.959824 0.997108 16.199853 0.851326 1 1 1 1 1 1 1 1 1 1 1 1 1 3268.524128 1855.16658 0.014099608 0.010198551 1.382510839 0.140668545
15 5780 22730 9622.776367 130.5 7750.143555 241.547531 193.476746 26800 8.27356 0.976582 0.80735 0.993568 39.838024 0.830042 7378.352051 110.235291 5472.570313 265.702179 187.969162 24700 8.27356 0.962435 0.826851 0.991051 27.769257 0.840056 1 1 1 1 1 1 1 1 1 1 1 1 1 9492.276367 7268.11676 0.040947341 0.039955582 1.024821529 0.010648241
16 6030 22730 7423.114258 99.426468 6282.859375 191.109436 189.822784 22800 8.27356 0.96797 0.851723 0.996231 38.842217 0.836686 5352.780273 119.852943 4257.102051 218.549377 181.77066 21400 8.27356 0.94789 0.900703 0.994102 24.492315 0.851326 1 1 1 1 1 1 1 1 1 1 1 1 1 7323.68779 5232.92733 0.031592584 0.028767377 1.098208701 0.04068488
17 6290 22730 3137.650879 99.882355 3098.009766 171.363327 188.476501 23200 12.835332 0.969441 0.925995 0.994911 18.309932 0.839134 1980.875 77.235291 1868.187866 189.268356 186.609512 20800 12.835332 0.962353 0.951263 0.994408 10.46596 0.842528 1 1 1 1 1 1 1 1 1 1 1 1 1 3037.768524 1903.639709 0.013104185 0.010465026 1.252188423 0.097669684
18 6530 22720 5687.55127 146.205887 4582.422363 240.364441 190.157852 26300 18.272425 0.964242 0.876915 0.993332 23.662199 0.836077 3933.670654 112.117645 3133.876709 257.515656 191.159576 25200 18.272425 0.969873 0.914589 0.990044 15.275462 0.834255 1 1 1 1 1 1 1 1 1 1 1 1 1 5541.345383 3821.553009 0.023903998 0.02100852 1.137824009 0.056075094
19 2290 23000 3150.979492 64.602943 2884.695068 176.065552 178.946869 19500 15.293344 0.945096 0.939102 0.995453 17.896627 0.85646 2962.510498 25.25 3143.312744 76.180534 177.876389 19200 15.293344 0.934623 0.946541 0.997139 38.888025 0.858407 1 1 1 1 1 1 1 1 1 1 1 1 1 3086.376549 2937.260498 0.013313868 0.01614723 0.824529517 -0.083793792
20 2550 22990 4276.133301 8.044118 3467.298096 31.018259 178.946869 19500 19.889948 0.959618 0.914841 0.999084 137.858585 0.85646 3509.978027 47.529411 2678.458984 130.732437 178.41243 18300 19.889948 0.954686 0.92997 0.996193 26.848563 0.857432 1 1 1 1 1 1 1 1 1 1 1 1 1 4268.089183 3462.448616 0.018411485 0.019034387 0.967274882 -0.01445009

Total number of rows: 5184

Table truncated, full table size 1746 Kbytes.




Supplementary data files not provided
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