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Sample GSM16440 Query DataSets for GSM16440
Status Public on May 10, 2004
Title GC2_011795_LT2_2D724_1
Sample type genomic
 
Channel 1
Source name 011795 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison 011795/LT2
User - PCheng
Date_of_Scan = Thu Apr 24 14:52:36 2003
 
Submission date Feb 04, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2520 3900 4638.791504 259.911774 3623.514648 413.215454 192.487091 25900 11.406793 0.975719 0.909447 0.989983 11.226084 0.831842 2579.898438 217.632355 2016.803833 503.250397 190.492355 24600 11.406793 0.967506 0.939484 0.981972 5.126471 0.835468 1 1 1 1 1 1 1 1 1 1 1 1 1 4378.87973 2362.266083 44.7759138 68.79891629 0.650822952 -0.186537139
2 2780 3900 1376.976685 323.764709 1070.829102 513.387695 190.659378 21500 20.634768 0.968588 0.967621 0.986221 2.682138 0.715237 1064.575562 262.279419 945.81897 430.970856 193.476746 20500 20.634768 0.975842 0.970985 0.98793 2.47018 0.658715 1 1 1 1 1 0 1 1 1 1 1 0 1 1053.211976 802.296143 10.76954188 23.36616759 0.46090322 -0.336390258
3 3030 3900 9427.506836 344.029419 8012.478516 554.124207 191.824478 23500 20.634768 0.971437 0.818115 0.985344 17.013346 0.833046 5379.480957 232.102936 4571.360352 479.262604 190.992981 23900 20.634768 0.969327 0.887115 0.985931 11.224496 0.834558 1 1 1 1 1 1 1 1 1 1 1 1 1 9083.477417 5147.378021 92.8824327 149.9128452 0.619576212 -0.207905265
4 3290 3900 3201.452393 400.602936 2440.426758 621.897217 191.326019 22100 30.355762 0.96555 0.930969 0.982681 5.14788 0.833953 2050.08667 268.397064 1765.799194 451.357056 191.824478 24200 30.355762 0.968651 0.951614 0.988007 4.542051 0.833046 1 1 1 1 1 1 1 1 1 1 1 1 1 2800.849457 1781.689606 28.63988088 51.89013843 0.551933021 -0.258113622
5 3550 3910 5808.74707 365.308838 4360.447266 532.01416 190.826248 26100 39.998325 0.966533 0.894478 0.985054 10.918407 0.834861 3563.063232 315.882355 2732.215576 467.517914 190.157852 25300 39.998325 0.9707 0.928368 0.98851 7.621234 0.836077 1 1 1 1 1 1 1 1 1 1 1 1 1 5443.438232 3247.180877 55.66147875 94.57127922 0.588566415 -0.230204524
6 3800 3910 4178.186523 329.352936 2814.672363 497.775543 188.645309 24100 39.998325 0.967128 0.923225 0.982506 8.393716 0.838827 2504.288086 346.911774 1887.003418 683.251648 190.826248 25000 39.998325 0.971018 0.943947 0.979179 3.66525 0.823485 1 1 1 1 1 1 1 1 1 1 1 1 1 3848.833587 2157.376312 39.35596581 62.83168241 0.626371351 -0.203168114
7 4030 3900 4359.464355 440 3158.987549 578.314758 182.12056 20900 20.634768 0.94632 0.914413 0.982506 7.538221 0.85069 3643.45874 346.220581 2935.630615 564.601746 186.097076 21800 20.634768 0.948161 0.924706 0.982536 6.453148 0.84346 1 1 1 1 1 1 1 1 1 1 1 1 1 3919.464355 3297.238159 40.07819555 96.02915341 0.417354461 -0.37949494
8 4270 3900 4659.692871 339.161774 4381.157715 577.982117 192.982544 24100 11.406793 0.976266 0.886322 0.983406 8.062002 0.830941 3646.580322 415.058838 2747.406006 590.542908 187.969162 19300 11.406793 0.947159 0.930199 0.985184 6.174963 0.840056 1 1 1 1 1 1 1 1 1 1 1 1 1 4320.531097 3231.521484 44.17927413 94.11521321 0.469416927 -0.328441254
9 4530 3900 5223.184082 357.926483 4579.839844 482.290405 187.290573 22300 20.634768 0.972053 0.889671 0.985779 10.829956 0.84129 3104.169678 280.117645 2964.241943 512.373291 189.319046 22400 20.634768 0.970761 0.925179 0.983894 6.058414 0.837602 1 1 1 1 1 1 1 1 1 1 1 1 1 4865.257599 2824.052033 49.74933506 82.24802481 0.604869663 -0.218338197
10 4780 3910 2217.346924 323.147064 2243.410156 519.414612 195.766495 24500 20.211592 0.985308 0.933334 0.98394 4.268934 0.825879 1573.643799 292.647064 1642.263184 517.54834 189.319046 21900 20.211592 0.965939 0.952644 0.986595 3.040574 0.80161 1 1 1 1 1 1 1 1 1 1 1 1 1 1894.19986 1280.996735 19.36900186 37.30790014 0.51916623 -0.284693565
11 5020 3910 2792.314697 347.661774 2379.93457 586.278931 190.659378 23200 10.622135 0.966512 0.93634 0.980927 4.762775 0.835165 1870.291626 156.529419 1665.503418 280.0513 182.12056 21600 10.622135 0.954456 0.954117 0.992043 6.678389 0.85069 1 1 1 1 1 1 1 1 1 1 1 1 1 2444.652923 1713.762207 24.99761932 49.91181284 0.500835732 -0.300304694
12 5300 3900 2185.551758 410.955872 1573.723022 601.111572 189.655014 24100 40.213818 0.962156 0.952576 0.983315 3.63585 0.822564 1999.33606 255.955887 1750.974243 425.579803 187.969162 24700 40.213818 0.966954 0.947266 0.990601 4.697911 0.840056 1 1 1 1 1 1 1 1 1 1 1 1 1 1774.595886 1743.380173 18.14600019 50.77440998 0.357384757 -0.446863974
13 5540 3910 9089.328125 275.029419 7837.77832 453.59613 192.817535 26800 30.069706 0.976379 0.822937 0.988365 20.038372 0.831241 5746 276.632355 4647.57373 510.764862 190.659378 25000 30.069706 0.967821 0.892723 0.984932 11.249795 0.835165 1 1 1 1 1 1 1 1 1 1 1 1 1 8814.298706 5469.367645 90.12996552 159.290509 0.565821317 -0.247320695
14 5790 3910 3520.797119 433.720581 2791.577637 608.352722 186.609512 21700 30.069706 0.959334 0.92408 0.985466 5.787427 0.842528 2074.663818 160.088242 1815.69751 290.639618 189.487106 22900 30.069706 0.966178 0.948982 0.992661 7.138269 0.837296 1 1 1 1 1 1 1 1 1 1 1 1 1 3087.076538 1914.575576 31.56667492 55.76032511 0.566113538 -0.247096459
15 6030 3910 9316.189453 576.911743 5179.589355 671.80011 180.89296 23200 20.211592 0.942995 0.852211 0.981918 13.867502 0.852922 6598.812012 221.529419 4490.064941 403.523834 192.156067 26600 20.211592 0.972704 0.886978 0.988647 16.352967 0.832444 1 1 1 1 1 1 1 1 1 1 1 1 1 8739.27771 6377.282593 89.36284382 185.7327311 0.481136756 -0.317731464
16 6280 3920 5818.624023 527.485291 4032.072021 637.321533 183.513474 21800 24.315084 0.94643 0.895424 0.98317 9.129809 0.848157 4262.647949 327.602936 3339.154297 634.332947 191.824478 23300 24.315084 0.972758 0.910889 0.982727 6.719891 0.833046 1 1 1 1 1 1 1 1 1 1 1 1 1 5291.138732 3935.045013 54.10415138 114.6047155 0.472093588 -0.325971898
17 6530 3910 4028.004395 409.632355 3338.446777 686.246521 188.982483 22300 20.211592 0.971972 0.913948 0.978607 5.869617 0.838214 2575.493164 87.029411 2319.823975 199.856659 189.822784 22100 20.211592 0.967837 0.930504 0.995239 12.886702 0.836686 1 1 1 1 1 1 1 1 1 1 1 1 1 3618.37204 2488.463753 36.99939815 72.47431213 0.51051741 -0.291989442
18 6780 3920 4743.373535 291.367645 3401.014893 484.081512 192.321655 25700 24.315084 0.979374 0.911072 0.985947 9.798708 0.832142 3119.39917 272.676483 2184.64209 454.043518 190.492355 24300 24.315084 0.968838 0.935867 0.98745 6.870265 0.835468 1 1 1 1 1 1 1 1 1 1 1 1 1 4452.00589 2846.722687 45.52365999 82.90828762 0.549084552 -0.260360774
19 2530 4150 3305.864014 357.147064 3269.584473 608.603577 190.992981 25000 20.634768 0.972012 0.92527 0.984276 5.431884 0.834558 1875.150879 326.25 1712.840454 541.475342 190.492355 23200 20.634768 0.971961 0.95237 0.985886 3.46304 0.816952 1 1 1 1 1 1 1 1 1 1 1 1 1 2948.71695 1548.900879 30.15188909 45.11037206 0.668402581 -0.174961882
20 2790 4150 4131.848145 472.735291 3080.708496 704.239746 184.378693 20400 30.355762 0.96431 0.916702 0.97541 5.867104 0.846584 2435.47998 204.926468 2126.333008 452.52832 185.583237 22500 30.355762 0.954857 0.941925 0.983887 5.381939 0.844394 1 1 1 1 1 1 1 1 1 1 1 1 1 3659.112854 2230.553512 37.41599035 64.96290382 0.575959327 -0.239608185

Total number of rows: 5184

Table truncated, full table size 1756 Kbytes.




Supplementary data files not provided
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