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Sample GSM16441 Query DataSets for GSM16441
Status Public on May 10, 2004
Title GC2_011795_LT2_2D724_2
Sample type genomic
 
Channel 1
Source name 011795 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison 011795/LT2
User - PCheng
Date_of_Scan = Thu Apr 24 14:52:36 2003
 
Submission date Feb 04, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2410 22650 5372.563477 212.735291 4796.736328 481.445862 189.655014 25200 31.067636 0.966262 0.877647 0.984352 11.159227 0.836991 2667.865479 352.691162 1905.452515 509.629089 187.460449 20800 31.067636 0.955808 0.947021 0.985664 5.234916 0.840981 1 1 1 1 1 1 1 1 1 1 1 1 1 5159.828186 2315.174317 0.019372447 0.017626106 1.099076963 0.041028105
2 2650 22660 1539.855835 303.264709 1279.285522 489.907501 192.156067 22900 17.753819 0.971952 0.960342 0.987534 3.143156 0.805567 839.617371 233.338242 727.187988 401.740601 186.438858 19600 17.753819 0.960967 0.978325 0.988678 2.089949 0.55732 1 1 1 1 1 1 1 1 1 1 1 0 1 1236.591126 606.279129 0.004642751 0.004615782 1.0058427 0.002530068
3 2910 22670 12534.46289 362.705872 11394.86426 644.841492 188.645309 24200 27.166889 0.962141 0.742027 0.984413 19.438053 0.828018 5545.865234 197.647064 4650.586914 418.549713 184.033096 22300 27.166889 0.941357 0.881973 0.990562 13.250195 0.847213 1 1 1 1 1 1 1 1 1 1 1 1 1 12171.75702 5348.21817 0.045698561 0.040717566 1.122330382 0.05012072
4 3170 22670 3748.399902 328.014709 3060.710205 732.611023 189.655014 24000 37.073719 0.964178 0.920464 0.979195 5.116494 0.836991 2074.623291 189.411758 1921.08313 376.802307 191.159576 21500 37.073719 0.97087 0.950371 0.990814 5.505867 0.834255 1 1 1 1 1 1 1 1 1 1 1 1 1 3420.385193 1885.211533 0.012841752 0.014352673 0.894728951 -0.04830851
5 3420 22670 7024.490723 307.25 5645.074219 525.817261 193.969681 26300 37.073719 0.974553 0.860924 0.98336 13.359186 0.829146 3285.205322 279.632355 2646.772217 548.054626 184.205978 22400 37.073719 0.941408 0.930405 0.98616 5.994303 0.846898 1 1 1 1 1 1 1 1 1 1 1 1 1 6717.240723 3005.572967 0.025219714 0.022882315 1.102148711 0.042240197
6 3660 22690 4636.330566 257.794128 3338.946777 361.057556 190.992981 25100 36.2061 0.969551 0.913765 0.991241 12.840974 0.834558 2389.415527 162.470581 1731.398682 381.984619 187.969162 24300 36.2061 0.966492 0.949158 0.991882 6.255266 0.840056 1 1 1 1 1 1 1 1 1 1 1 1 1 4378.536438 2226.944946 0.016439107 0.01695439 0.969607683 -0.013403952
7 3890 22660 4123.260254 358.852936 3897.821777 497.061707 195.115021 24600 8.875651 0.9819 0.894402 0.988213 8.295268 0.827064 3042.883057 202.088242 2600.30127 323.461456 190.659378 21400 8.875651 0.970588 0.931717 0.991333 9.407251 0.835165 1 1 1 1 1 1 1 1 1 1 1 1 1 3764.407318 2840.794815 0.014133374 0.02162781 0.653481509 -0.184766697
8 4160 22670 5336.353027 261.470581 5073.618164 414.595917 191.326019 23800 27.166889 0.971009 0.875519 0.988213 12.871215 0.833953 2544.834229 265.617645 2447.569092 453.407227 192.321655 20500 27.166889 0.973232 0.924515 0.985863 5.61269 0.832142 1 1 1 1 1 1 1 1 1 1 1 1 1 5074.882446 2279.216584 0.019053521 0.017352349 1.098036941 0.040616951
9 4400 22670 6528.973633 415.455872 5177.339355 605.996399 180.54068 18900 17.367182 0.947866 0.872459 0.985161 10.773948 0.853562 2416.273193 237.5 2194.348877 393.549316 188.645309 20500 17.367182 0.963007 0.943764 0.988983 6.139696 0.838827 1 1 1 1 1 1 1 1 1 1 1 1 1 6113.517761 2178.773193 0.022953051 0.016587644 1.383743888 0.141055716
10 4650 22670 2218.339111 272.941162 2331.456787 461.364197 190.32518 23300 17.367182 0.964585 0.927864 0.990295 4.808217 0.835772 1266.869751 106.573532 1303.065186 286.276642 190.157852 19200 17.367182 0.974407 0.954597 0.991409 4.425334 0.836077 1 1 1 1 1 1 1 1 1 1 1 1 1 1945.397949 1160.296219 0.007303949 0.008833678 0.826829831 -0.082583863
11 4900 22670 2835.781738 289.294128 2654.696777 512.536987 191.824478 22000 17.367182 0.969558 0.929619 0.983505 5.532833 0.833046 1354.768799 165.661758 1357.477051 295.665222 192.817535 19900 17.367182 0.974257 0.959106 0.990669 4.582104 0.831241 1 1 1 1 1 1 1 1 1 1 1 1 1 2546.48761 1189.107041 0.009560725 0.009053023 1.056080874 0.023697177
12 5140 22670 2791.401855 389.088226 2086.342041 550.070679 188.982483 22400 8.074533 0.965843 0.936226 0.984085 5.074624 0.838214 1889.662354 197.5 1772.569092 382.773987 182.12056 23100 8.074533 0.950071 0.948418 0.989296 4.936758 0.85069 1 1 1 1 1 1 1 1 1 1 1 1 1 2402.313629 1692.162354 0.009019427 0.012882932 0.700106705 -0.154835763
13 5410 22670 10688.9209 409.044128 8221.71582 503.684082 186.438858 23900 27.166889 0.957403 0.809647 0.98732 21.221478 0.842838 4468.474609 248.470581 3592.851563 491.186615 189.319046 23600 27.166889 0.964233 0.910362 0.987495 9.097305 0.837602 1 1 1 1 1 1 1 1 1 1 1 1 1 10279.87677 4220.004028 0.038595543 0.032128138 1.20130035 0.079651604
14 5660 22670 3003.959717 272.323517 2411.399902 387.282898 184.551254 22400 27.166889 0.946121 0.933472 0.990059 7.7565 0.84627 1393.657349 223.176468 1264.279907 415.31311 188.813965 21600 27.166889 0.963691 0.963737 0.989716 3.355679 0.813282 1 1 1 1 1 1 1 1 1 1 1 1 1 2731.6362 1170.480881 0.010255861 0.008911217 1.15089339 0.061035096
15 5900 22660 8913.560547 451.485291 6174.274414 626.217224 188.645309 25500 17.753819 0.972232 0.825905 0.981979 14.233975 0.838827 4822.350586 200.897064 3412.826904 340.841766 190.992981 25100 17.753819 0.975489 0.895454 0.990547 14.148356 0.834558 1 1 1 1 1 1 1 1 1 1 1 1 1 8462.075256 4621.453522 0.031770652 0.035184491 0.902973186 -0.044325146
16 6150 22680 5432.230957 263.235291 4858.18457 435.777588 191.990341 24700 22.091625 0.969594 0.874466 0.987663 12.465604 0.832745 3358.944092 216.632355 2727.695313 393.010834 187.460449 21500 22.091625 0.958278 0.923927 0.98864 8.546696 0.840981 1 1 1 1 1 1 1 1 1 1 1 1 1 5168.995666 3142.311737 0.019406866 0.023923348 0.811210309 -0.090866539
17 6410 22670 2851.1521 202.941177 2558.57373 318.45282 188.307541 23000 27.166889 0.96685 0.924835 0.990807 8.953138 0.839441 1320.673706 331.205872 1211.838379 546.877014 186.609512 19000 27.166889 0.965886 0.963692 0.984337 2.414937 0.643983 1 1 1 1 1 1 1 1 1 1 1 0 1 2648.210923 989.467834 0.009942642 0.007533111 1.31985874 0.120527453
18 6650 22660 5164.25 338.176483 3897.0896 646.259766 185.925949 24400 17.753819 0.964495 0.886276 0.982513 7.990982 0.843771 2524.462646 168.235291 2044.566284 367.046844 187.630173 25500 17.753819 0.970673 0.937889 0.987671 6.877767 0.840672 1 1 1 1 1 1 1 1 1 1 1 1 1 4826.073517 2356.227355 0.018119374 0.017938655 1.010074251 0.0043533
19 2420 22900 5257.581055 332.294128 5773.07959 544.949036 189.319046 23400 40.020233 0.966026 0.877861 0.983444 9.64784 0.837602 2007.797974 170.235291 1727.569458 410.85849 185.411636 20300 40.020233 0.956582 0.951355 0.985863 4.886836 0.844706 1 1 1 1 1 1 1 1 1 1 1 1 1 4925.286927 1837.562683 0.018491868 0.013989908 1.321800567 0.121165934
20 2660 22900 4546.144043 261 4355.528809 473.542023 192.982544 25000 31.067636 0.974064 0.891983 0.985229 9.600297 0.830941 2232.351074 258.441162 1986.378418 447.540253 188.307541 22500 31.067636 0.965404 0.945641 0.987862 4.988045 0.839441 1 1 1 1 1 1 1 1 1 1 1 1 1 4285.144043 1973.909912 0.016088467 0.01502796 1.070568986 0.029614658

Total number of rows: 5184

Table truncated, full table size 1754 Kbytes.




Supplementary data files not provided
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