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Sample GSM16442 Query DataSets for GSM16442
Status Public on May 10, 2004
Title GC2_011795_LT2_2D724_3
Sample type genomic
 
Channel 1
Source name 011795 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison 011795/LT2
User - PCheng
Date_of_Scan = Thu Apr 24 14:52:36 2003
 
Submission date Feb 04, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2290 41410 5200.501953 194.985291 4607.521973 430.968719 188.645309 24500 44.183853 0.961694 0.883743 0.983856 12.067006 0.838827 1538.026367 249.147064 1349.107788 463.582794 190.492355 22800 44.183853 0.971605 0.959511 0.988464 3.317695 0.811949 1 1 1 1 1 1 1 1 1 1 1 1 1 5005.516662 1288.879303 0.018592389 0.012991448 1.431125182 0.155677623
2 2540 41420 1325.559204 263.382355 1079.185791 468.257965 187.799744 21100 43.465492 0.956931 0.965782 0.985008 2.830831 0.754888 647.203491 234.132355 662.209167 508.062958 189.487106 17200 43.465492 0.960666 0.980492 0.983955 1.273865 0.339697 1 1 1 1 1 0 1 1 1 1 1 0 1 1062.176849 413.071136 0.003945328 0.004163611 0.947573582 -0.023387056
3 2790 41410 11534.19531 257.808838 10107.53711 392.316132 185.583237 22500 44.183853 0.969677 0.77124 0.989365 29.400258 0.844394 3492.889893 186.955887 3193.635254 351.330414 191.159576 22700 44.183853 0.972493 0.910683 0.992126 9.941894 0.834255 1 1 1 1 1 1 1 1 1 1 1 1 1 11276.38648 3305.934006 0.041884779 0.033322647 1.256946329 0.099316734
4 3040 41420 3904.142334 266.529419 3251.945313 522.963135 187.799744 23900 43.465492 0.962513 0.915504 0.985146 7.465426 0.840364 1386.46228 153.323532 1166.765137 314.50827 189.990387 21200 43.465492 0.96094 0.967773 0.991341 4.408349 0.836381 1 1 1 1 1 1 1 1 1 1 1 1 1 3637.612915 1233.138748 0.013511475 0.012429603 1.087039938 0.036245501
5 3290 41430 7128.564941 192.514709 5766.831055 398.860779 191.159576 24600 45.014275 0.967398 0.850075 0.989632 17.872314 0.834255 1981.530396 174.117645 1657.297119 405.713104 186.950348 23000 45.014275 0.956293 0.955185 0.990456 4.884068 0.841908 1 1 1 1 1 1 1 1 1 1 1 1 1 6936.050232 1807.412751 0.025763123 0.018218082 1.414151211 0.15049585
6 3540 41420 5736.174805 226.014709 4624.061035 383.623901 189.319046 25200 43.465492 0.959575 0.881065 0.990929 14.9526 0.837602 2233.536377 201.235291 1781.563354 374.071747 188.813965 22000 43.465492 0.96792 0.947266 0.990364 5.970877 0.83852 1 1 1 1 1 1 1 1 1 1 1 1 1 5510.160096 2032.301086 0.020466826 0.020484877 0.999118798 -0.00038287
7 3770 41410 5326.603516 314.191162 5083.84082 452.450409 189.655014 23700 24.802656 0.963037 0.872765 0.989067 11.77279 0.836991 2245.759521 211.588242 1971.353149 476.759796 187.460449 21200 24.802656 0.969166 0.946014 0.984497 4.710463 0.840981 1 1 1 1 1 1 1 1 1 1 1 1 1 5012.412354 2034.171279 0.018618002 0.020503728 0.90803008 -0.041899764
8 4030 41420 7340.439453 279.617645 6713.477539 426.574951 186.950348 21400 33.47728 0.953642 0.843231 0.987869 17.207854 0.841908 2471.286377 285.176483 2176.676758 581.750244 187.290573 20600 33.47728 0.962744 0.942024 0.983009 4.248019 0.839949 1 1 1 1 1 1 1 1 1 1 1 1 1 7060.821808 2186.109894 0.026226572 0.022035216 1.190211723 0.075624224
9 4270 41410 7104.614258 222.897064 7695.833008 386.246185 187.969162 23600 24.802656 0.972237 0.809959 0.988205 18.394005 0.840056 2265.014648 167.044113 2167.320313 355.108582 188.982483 20600 24.802656 0.963854 0.938354 0.988754 6.378372 0.838214 1 1 1 1 1 1 1 1 1 1 1 1 1 6881.717194 2097.970535 0.02556131 0.021146802 1.20875532 0.082338399
10 4520 41410 4019.968506 352.941162 4474.798828 585.418823 187.630173 22300 24.802656 0.961908 0.876808 0.983192 6.866825 0.840672 1379.587891 135.808823 1489.44165 314.681122 186.779999 19900 24.802656 0.963274 0.95797 0.990906 4.384082 0.842218 1 1 1 1 1 1 1 1 1 1 1 1 1 3667.027344 1243.779068 0.013620731 0.012536854 1.086455309 0.036011867
11 4770 41420 5114.583008 186.132355 5367.268555 423.106567 190.32518 22300 23.499104 0.969178 0.852272 0.985931 12.088167 0.835772 1828.527344 179.338242 1838.294678 347.68988 183.513474 20100 23.499104 0.947198 0.945518 0.991333 5.259076 0.848157 1 1 1 1 1 1 1 1 1 1 1 1 1 4928.450653 1649.189102 0.018306136 0.016623244 1.101237313 0.041880918
12 5030 41430 3606.057617 434.911774 2672.969238 581.0578 182.818344 22600 35.464977 0.946757 0.91954 0.986267 6.206022 0.849421 1719.277466 234.808823 1516.226929 489.544434 184.205978 20900 35.464977 0.955682 0.958702 0.984787 3.511995 0.818577 1 1 1 1 1 1 1 1 1 1 1 1 1 3171.145843 1484.468643 0.011778839 0.01496292 0.787201929 -0.10391385
13 5280 41420 12099.79102 246.779419 11448.16895 462.734558 192.156067 25800 33.47728 0.969925 0.753738 0.988174 26.148449 0.832444 4480.208496 198.161758 3515.409912 299.910828 185.925949 21100 33.47728 0.965475 0.906876 0.9935 14.938469 0.843771 1 1 1 1 1 1 1 1 1 1 1 1 1 11853.0116 4282.046738 0.044026584 0.043161519 1.020042502 0.008618268
14 5540 41430 4497.847656 281.75 4232.179688 534.37793 191.159576 24300 45.014275 0.970688 0.894478 0.984222 8.416979 0.834255 1717.14978 303.985291 1628.533813 501.974792 186.779999 20700 45.014275 0.969828 0.953163 0.987953 3.420789 0.815525 1 1 1 1 1 1 1 1 1 1 1 1 1 4216.097656 1413.164489 0.015660187 0.014244199 1.099408038 0.041158908
15 5770 41430 13585.65137 334.397064 9853.503906 530.279541 188.138428 24400 26.253456 0.9562 0.756828 0.98497 25.619792 0.837886 5739.931641 144.735291 4343.671875 353.084381 190.32518 24800 26.253456 0.967901 0.891281 0.990288 16.256544 0.835772 1 1 1 1 1 1 1 1 1 1 1 1 1 13251.2543 5595.19635 0.049220188 0.056397603 0.872735453 -0.059117381
16 6030 41420 8614.279297 162.970581 7846.406738 352.892914 193.805511 24700 33.47728 0.974979 0.809296 0.987541 24.410463 0.829445 3863.075928 145.323532 3267.547607 381.412323 188.138428 22400 33.47728 0.952467 0.916283 0.987427 10.128346 0.839748 1 1 1 1 1 1 1 1 1 1 1 1 1 8451.308716 3717.752396 0.031391368 0.037473631 0.837692189 -0.076915534
17 6290 41420 5223.438477 235.514709 5125.944336 414.238892 190.492355 23500 43.465492 0.97427 0.873047 0.988487 12.609725 0.835468 1884.188721 160.323532 1754.861328 324.882721 187.969162 19600 43.465492 0.953735 0.950607 0.989555 5.799597 0.840056 1 1 1 1 1 1 1 1 1 1 1 1 1 4987.923768 1723.865189 0.018527042 0.017375952 1.066246134 0.027857469
18 6520 41430 7300.983398 335.691162 5447.595215 453.111481 189.822784 23900 26.253456 0.965815 0.859161 0.988411 16.112996 0.836686 2880.647949 149.132355 2242.359863 385.248749 189.990387 23300 26.253456 0.964684 0.926712 0.989555 7.477371 0.836381 1 1 1 1 1 1 1 1 1 1 1 1 1 6965.292236 2731.515594 0.025871739 0.027532713 0.939672723 -0.02702338
19 2290 41650 4868.616211 318.014709 5488.619141 540.374207 190.826248 23700 47.065662 0.967488 0.886002 0.980682 9.009712 0.834861 1190.526001 181.382355 1119.690918 395.028015 188.645309 19200 47.065662 0.968379 0.967224 0.988693 3.013776 0.80055 1 1 1 1 1 1 1 1 1 1 1 1 1 4550.601502 1009.143646 0.016902661 0.010171812 1.661715909 0.220556778
20 2540 41650 4741.195801 240.602936 4381.111328 439.17215 188.813965 25000 47.065662 0.969753 0.894379 0.988541 10.795757 0.83852 1662.303345 261.926483 1430.195923 544.557068 189.990387 21100 47.065662 0.963726 0.954643 0.987663 3.052579 0.802081 1 1 1 1 1 1 1 1 1 1 1 1 1 4500.592865 1400.376862 0.01671691 0.014115304 1.184310999 0.073465763

Total number of rows: 5184

Table truncated, full table size 1753 Kbytes.




Supplementary data files not provided
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