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Sample GSM16608 Query DataSets for GSM16608
Status Public on May 10, 2004
Title GC2_SARB21_LT2_2D734_3
Sample type genomic
 
Channel 1
Source name SARB21 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Gallinarum; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Gallinarum; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison SARB21/LT2
User - PCheng
Date_of_Scan = Tue May 13 12:03:11 2003
 
Submission date Feb 06, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2080 41290 2700.60083 123.75 2198.968506 270.718201 185.583237 22300 19.940205 0.95176 0.939903 0.993469 9.97569 0.844394 1948.032104 65.191177 1413.924927 163.376343 186.609512 21800 19.940205 0.959924 0.961372 0.995255 11.923587 0.842528 1 1 1 1 1 1 1 1 1 1 1 1 1 2576.85083 1882.840927 0.013235696 0.012558612 1.05391387 0.02280512
2 2350 41290 1594.14209 44.558823 1139.228882 119.860909 182.818344 18300 39.923809 0.965222 0.970116 0.995483 13.299933 0.849421 966.340454 60.808823 804.461792 169.316559 186.609512 18800 39.923809 0.963024 0.978134 0.994667 5.7073 0.842528 1 1 1 1 1 1 1 1 1 1 1 1 1 1549.583267 905.531631 0.007959255 0.006039927 1.317773483 0.119840764
3 2580 41290 12475.30078 99.161766 11657.10059 371.401459 183.686844 23300 19.940205 0.961567 0.733971 0.993271 33.5898 0.822647 7497.565918 103.838234 6537.549316 220.361618 185.239883 22800 19.940205 0.963842 0.842308 0.993835 34.023919 0.845018 1 1 1 1 1 1 1 1 1 1 1 1 1 12376.13902 7393.727684 0.063568605 0.049316413 1.2889949 0.110251199
4 2840 41290 4750.63623 99.823532 3776.248535 195.613007 187.120529 22000 29.92927 0.953706 0.911003 0.994179 24.285891 0.841599 3528.25415 179.558823 2899.820313 279.218597 192.65239 24000 29.92927 0.974368 0.930557 0.992104 12.636172 0.831541 1 1 1 1 1 1 1 1 1 1 1 1 1 4650.812698 3348.695327 0.023888361 0.022335911 1.069504669 0.029182685
5 3100 41300 5190.452148 41.132355 3963.844238 128.944504 185.067963 23000 40.878708 0.955416 0.902191 0.99514 40.25338 0.845331 4355.632813 97.926468 3545.753174 180.517197 189.990387 24500 40.878708 0.974629 0.916443 0.994766 24.128631 0.836381 1 1 1 1 1 1 1 1 1 1 1 1 1 5149.319793 4257.706345 0.026448885 0.028399045 0.931330081 -0.030896369
6 3340 41310 5676.601074 49.323528 3730.590332 151.650955 182.295258 21800 35.356438 0.963205 0.911057 0.995049 37.432017 0.850372 3768.303223 121.191177 2961.859375 220.313705 188.645309 25400 35.356438 0.969212 0.934067 0.994217 17.104261 0.838827 1 1 1 1 1 1 1 1 1 1 1 1 1 5627.277546 3647.112046 0.028903859 0.02432636 1.188170324 0.074878701
7 3580 41300 2684.269775 60.308823 2811.348145 165.393448 186.268051 21500 21.789217 0.962469 0.929558 0.994583 16.229602 0.843149 2320.605225 88.735291 2412.464355 191.865906 190.492355 22800 21.789217 0.964989 0.934921 0.993065 12.094933 0.835468 1 1 1 1 1 1 1 1 1 1 1 1 1 2623.960952 2231.869934 0.013477672 0.014886648 0.905353026 -0.043182043
8 3830 41290 3365.22168 148.279419 3262.62793 237.39978 188.813965 22100 19.940205 0.969942 0.916763 0.994293 14.175336 0.83852 2532.502197 138.691177 2486.466553 232.769135 188.138428 22300 19.940205 0.95775 0.934631 0.994728 10.879888 0.839748 1 1 1 1 1 1 1 1 1 1 1 1 1 3216.942261 2393.81102 0.016523451 0.0159668 1.034863037 0.014882875
9 4080 41300 4725.4375 162.132355 5736.226563 270.005676 187.799744 24000 21.789217 0.958241 0.85183 0.992409 17.501252 0.840364 3008.371582 77.264709 3205.97876 157.930893 186.950348 21800 21.789217 0.965179 0.921844 0.995346 19.048658 0.841908 1 1 1 1 1 1 1 1 1 1 1 1 1 4563.305145 2931.106873 0.023438888 0.019550582 1.198884452 0.078777328
10 4330 41290 2567.646729 115.117645 3176.933838 253.374329 187.969162 21800 19.940205 0.964403 0.917358 0.995415 10.133808 0.840056 1733.812134 70.176468 1936.505005 145.156219 186.950348 19700 19.940205 0.96166 0.948219 0.99588 11.944456 0.841908 1 1 1 1 1 1 1 1 1 1 1 1 1 2452.529084 1663.635666 0.012597132 0.011096506 1.135234066 0.055085415
11 4570 41290 2734.900391 95.794121 3509.521484 208.064178 187.969162 22100 9.973081 0.954539 0.901825 0.995171 13.144504 0.840056 1713.173218 44.073528 2103.44873 136.281021 187.969162 20200 9.973081 0.961601 0.933105 0.995834 12.570886 0.840056 1 1 1 1 1 1 1 1 1 1 1 1 1 2639.10627 1669.09969 0.013555464 0.011132951 1.217598413 0.085504073
12 4830 41280 1947.816162 49.764706 2016.837646 173.334305 180.364288 22300 22.813452 0.953818 0.933243 0.996819 11.237338 0.853883 1313.321533 62.14706 1420.241089 115.732872 179.656982 22700 22.813452 0.937895 0.958046 0.996735 11.34787 0.855169 1 1 1 1 1 1 1 1 1 1 1 1 1 1898.051456 1251.174473 0.009749122 0.008345376 1.168206392 0.067519578
13 5080 41300 5693.776367 38.676472 4204.054688 96.945503 187.460449 21900 21.789217 0.960653 0.905594 0.997009 58.731722 0.840981 3969.444824 80.25 3340.433838 182.8479 188.138428 24500 21.789217 0.963237 0.927071 0.994469 21.708999 0.839748 1 1 1 1 1 1 1 1 1 1 1 1 1 5655.099895 3889.194824 0.029046766 0.025941061 1.119721592 0.049110053
14 5340 41290 2556.108887 59.926472 2099.506348 181.555252 184.723648 21100 29.92927 0.961495 0.946861 0.997215 14.078959 0.845957 2002.327393 95.588234 1758.824951 161.982147 189.487106 22600 29.92927 0.964676 0.954369 0.996468 12.361408 0.837296 1 1 1 1 1 1 1 1 1 1 1 1 1 2496.182415 1906.739159 0.012821352 0.012718015 1.008125279 0.003514505
15 5570 41290 5645.695313 97.544121 4138.271973 233.960922 186.609512 24600 9.973081 0.957844 0.873413 0.993752 24.130933 0.842528 4786 60.14706 3508.440186 174.697372 187.120529 25000 9.973081 0.964965 0.896011 0.994629 27.395947 0.841599 1 1 1 1 1 1 1 1 1 1 1 1 1 5548.151192 4725.85294 0.028497436 0.031521599 0.904060627 -0.043802444
16 5830 41300 4996.507324 25.470589 4359.944336 78.539932 182.295258 21100 21.789217 0.939743 0.885277 0.997719 63.617413 0.850372 3646.866455 65.588234 3415.282471 139.803619 188.645309 23200 21.789217 0.967457 0.9086 0.996597 26.085637 0.838827 1 1 1 1 1 1 1 1 1 1 1 1 1 4971.036735 3581.278221 0.025533155 0.023887247 1.068903212 0.028938382
17 6090 41300 604.814087 51.455883 555.320862 156.136124 181.77066 15600 31.191656 0.943583 0.983391 0.995262 3.873633 0.829748 1932.070068 125.529411 1959.5 214.154251 190.659378 21400 31.191656 0.960122 0.94944 0.993523 9.021862 0.835165 1 1 1 1 1 1 1 1 1 1 1 1 1 553.358204 1806.540657 0.00284226 0.012049687 0.235878352 -0.627311916
18 6330 41280 3091.688477 179.5 2763.446777 768.841309 185.925949 22800 22.813452 0.957785 0.906181 0.99469 4.021231 0.833921 2812.630615 167.191177 2668.626953 343.861389 185.583237 24100 22.813452 0.954011 0.9114 0.994003 8.179548 0.844394 1 1 1 1 1 1 1 1 1 1 1 1 1 2912.188477 2645.439438 0.014958119 0.01764517 0.847717457 -0.071748873
19 2100 41540 4793.374512 146.794113 5493.993652 301.522034 191.326019 21100 39.923809 0.970431 0.883667 0.992165 15.897261 0.833953 3262.56665 97.014709 3314.677002 189.835953 185.925949 21000 39.923809 0.958169 0.927742 0.994606 17.186242 0.843771 1 1 1 1 1 1 1 1 1 1 1 1 1 4646.580399 3165.551941 0.023866622 0.021114338 1.130351418 0.053213483
20 2340 41540 6155.28418 107.764709 5204.898926 216.448196 178.590759 20400 29.92927 0.941309 0.870995 0.994438 28.437678 0.857108 4173.389648 96 3620.479248 248.880844 184.895889 21300 29.92927 0.947341 0.91214 0.993034 16.768625 0.845644 1 1 1 1 1 1 1 1 1 1 1 1 1 6047.519471 4077.389648 0.031062383 0.027196327 1.142153646 0.057724531

Total number of rows: 5184

Table truncated, full table size 1747 Kbytes.




Supplementary data files not provided
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