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Sample GSM16672 Query DataSets for GSM16672
Status Public on May 10, 2004
Title GC2_022382_LT2_2D772_1
Sample type genomic
 
Channel 1
Source name 022382 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Java
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Java
Extracted molecule genomic DNA
 
 
Description genomic comparison 022382/LT2
User - PCheng
Date_of_Scan = Tue Jul 01 12:20:00 2003
 
Submission date Feb 06, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 1770 3620 488.75 78.985291 510.526917 217.627609 182.992371 17200 17.650867 0.94632 0.984581 0.995682 2.245809 0.598882 336.333344 45.514706 322.976929 134.01387 179.656982 11700 17.650867 0.958016 0.990669 0.996513 2.509691 0.669251 1 1 1 1 1 0 1 1 1 1 1 0 1 409.764709 290.818638 79.07790041 53.86245557 1.468145104 0.166768981
2 2030 3620 519.628601 72.588234 605.359863 147.48703 190.659378 17500 21.980892 0.966179 0.982666 0.995865 3.523216 0.818946 396.486725 76.205879 444.743774 188.167557 177.518127 11300 21.980892 0.939608 0.987869 0.99485 2.107094 0.561892 1 1 1 1 1 1 1 1 1 1 1 0 1 447.040367 320.280846 86.27149396 59.31914459 1.454361734 0.162672439
3 2270 3610 1039.323486 97.882355 938.043579 146.138306 180.89296 20400 8.116306 0.937802 0.974632 0.996361 7.111917 0.852922 801.081421 21.220589 690.23761 61.924568 179.656982 17200 8.116306 0.941796 0.97924 0.998192 12.936407 0.855169 1 1 1 1 1 1 1 1 1 1 1 1 1 941.441131 779.860832 181.6827715 144.4378521 1.257861211 0.099632725
4 2530 3610 881.621765 73.558823 788.657776 181.52269 187.799744 19300 15.410415 0.956978 0.97699 0.9953 4.856813 0.840364 802.463867 49.823528 683.485901 135.49411 171.127197 16600 15.410415 0.92404 0.979759 0.994949 5.9225 0.870678 1 1 1 1 1 1 1 1 1 1 1 1 1 808.062942 752.640339 155.9429581 139.3963506 1.11870187 0.048714364
5 2780 3610 1240.737427 47.14706 977.784241 95.693741 182.818344 19800 15.410415 0.95382 0.971046 0.997314 12.965711 0.849421 1107.759521 43.279411 870.254028 149.491364 181.42009 18300 15.410415 0.935998 0.976479 0.994736 7.410191 0.851963 1 1 1 1 1 1 1 1 1 1 1 1 1 1193.590367 1064.48011 230.3434583 197.1521255 1.168353918 0.067574419
6 3020 3620 1241.805298 93.308823 982.098938 189.416565 186.268051 19000 17.650867 0.964386 0.970299 0.994041 6.555949 0.843149 961.934753 29.92647 745.101257 104.698044 184.551254 18400 17.650867 0.946991 0.979706 0.996544 9.187705 0.84627 1 1 1 1 1 1 1 1 1 1 1 1 1 1148.496475 932.008283 221.6410732 172.6170478 1.284004541 0.10856656
7 3270 3610 608.768799 48.867645 619.003784 178.506821 191.326019 18600 8.116306 0.964375 0.979767 0.99707 3.410339 0.815169 661.614807 37.485294 730.967651 98.102516 184.895889 13500 8.116306 0.946252 0.975471 0.996956 6.744117 0.845644 1 1 1 1 1 1 1 1 1 1 1 1 1 559.901154 624.129513 108.0517837 115.5948889 0.934745339 -0.029306692
8 3510 3610 632.544922 65.823532 579.771484 162.435837 187.460449 16700 9.709169 0.960273 0.981583 0.994843 3.894122 0.830339 489.057983 29.191177 537.251648 106.744392 178.233932 13800 9.709169 0.934117 0.980164 0.99559 4.58158 0.848061 1 1 1 1 1 1 1 1 1 1 1 1 1 566.72139 459.866806 109.3679779 85.17182934 1.284086285 0.108594207
9 3770 3600 720.641479 52.514706 707.522278 136.46994 186.268051 15900 4.493964 0.958824 0.978699 0.995506 5.280588 0.843149 848.366211 41.720589 879.213074 97.176537 180.54068 14200 4.493964 0.955483 0.975021 0.996925 8.730155 0.853562 1 1 1 1 1 1 1 1 1 1 1 1 1 668.126773 806.645622 128.9375616 149.3986571 0.863043645 -0.063967241
10 4020 3610 630.30304 88.088234 632.093079 202.032791 186.779999 16500 8.116306 0.949661 0.979652 0.994255 3.119806 0.80468 648.081055 23.044117 685.183411 73.91452 186.609512 14800 8.116306 0.951733 0.97699 0.997528 8.76798 0.842528 1 1 1 1 1 1 1 1 1 1 1 1 1 542.214806 625.036938 104.6386072 115.7629529 0.903904095 -0.043877646
11 4270 3600 508.790527 67.411766 466.15625 172.574554 185.754669 14800 4.493964 0.947478 0.985939 0.995811 2.948236 0.786196 403.273499 23.529411 411.142792 90.214584 179.124664 11700 4.493964 0.925773 0.988014 0.996597 4.470159 0.845444 1 1 1 1 1 0 1 1 1 1 1 1 1 441.378761 379.744088 85.17889642 70.33231848 1.211091832 0.083177075
12 4520 3600 383.051483 67.852943 414.552094 144.498642 184.895889 13600 4.493964 0.961787 0.986824 0.995911 2.6509 0.706907 442.711853 26.794117 473.949249 91.451897 177.159134 11800 4.493964 0.930548 0.985458 0.998154 4.840926 0.853821 1 1 1 1 1 0 1 1 1 1 1 1 1 315.19854 415.917736 60.82817336 77.03203182 0.789647786 -0.102566578
13 4780 3590 875.485596 108.220589 776.748474 181.692444 189.150833 20800 18.604393 0.961519 0.980225 0.995857 4.818503 0.837908 965.634705 72.220589 736.517395 402.996796 180.364288 16700 18.604393 0.94732 0.978737 0.996521 2.396135 0.638969 1 1 1 1 1 1 1 1 1 1 1 0 1 767.265007 893.414116 148.0696226 165.4690307 0.894847948 -0.048250753
14 5030 3600 707.91748 60.39706 634.829773 121.196297 187.630173 20600 13.849266 0.973301 0.98082 0.996857 5.841082 0.840672 694.19397 52.088234 747.865356 198.982239 180.89296 16500 13.849266 0.937739 0.982124 0.992104 3.488723 0.817808 1 1 1 1 1 1 1 1 1 1 1 1 1 647.52042 642.105736 124.9608718 118.9242612 1.050760127 0.021503584
15 5270 3570 1438.900879 105.044121 1293.39978 162.004272 185.925949 22200 32.911388 0.956855 0.961388 0.996101 8.88187 0.843771 1363.826538 45.10294 1308.575928 122.944244 177.33873 19600 32.911388 0.945642 0.962555 0.996864 11.093049 0.859384 1 1 1 1 1 1 1 1 1 1 1 1 1 1333.856758 1318.723598 257.4125823 244.2405057 1.053930762 0.022812081
16 5520 3580 978.120422 81.529411 873.172852 163.457275 187.290573 19100 22.996485 0.954018 0.974594 0.995827 5.983952 0.84129 1031.623535 26.882353 1023.738342 78.796646 172.608841 17000 22.996485 0.925018 0.973061 0.997566 13.092226 0.867984 1 1 1 1 1 1 1 1 1 1 1 1 1 896.591011 1004.741182 173.0274304 186.0878919 0.92981563 -0.031603158
17 5780 3580 887.535156 78.632355 1157.146362 194.126663 182.818344 18500 26.465916 0.957361 0.967377 0.994087 4.571938 0.847838 947.189758 74.058823 1022.717651 173.112503 176.619293 13700 26.465916 0.940135 0.971298 0.993683 5.471527 0.860692 1 1 1 1 1 1 1 1 1 1 1 1 1 808.902801 873.130935 156.1050372 161.7123872 0.965325167 -0.015326371
18 6040 3570 726.098877 68.558823 726.829285 170.38353 190.157852 18200 40.328308 0.975386 0.974915 0.994606 4.261556 0.836077 658.412109 20.07353 626.80011 78.737671 178.946869 16500 40.328308 0.951052 0.980705 0.996796 8.362098 0.85646 1 1 1 1 1 1 1 1 1 1 1 1 1 657.540054 638.338579 126.8944977 118.2265469 1.07331645 0.030727786
19 1780 3860 969.936157 134.588242 2403.878174 244.029251 183.860046 18800 15.410415 0.954744 0.963387 0.993042 3.974672 0.832627 627.340027 47.14706 1369.982178 139.556366 184.205978 15000 15.410415 0.953755 0.96991 0.995186 4.495245 0.846041 1 1 1 1 1 1 1 1 1 1 1 1 1 835.347915 580.192967 161.2085125 107.457411 1.500208418 0.176151598
20 2020 3860 2229.004883 46.176472 1942.568115 119.492455 186.438858 20600 8.116306 0.963973 0.94986 0.996109 18.653938 0.842838 2170.180176 47.676472 1629.224609 141.209854 176.97937 17200 8.116306 0.941106 0.958168 0.996452 15.368475 0.860038 1 1 1 1 1 1 1 1 1 1 1 1 1 2182.828411 2122.503704 421.2502539 393.1084412 1.071587912 0.030027806

Total number of rows: 5184

Table truncated, full table size 1728 Kbytes.




Supplementary data files not provided
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