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Sample GSM16674 Query DataSets for GSM16674
Status Public on May 10, 2004
Title GC2_022382_LT2_2D772_3
Sample type genomic
 
Channel 1
Source name 022382 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Java
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Java
Extracted molecule genomic DNA
 
 
Description genomic comparison 022382/LT2
User - PCheng
Date_of_Scan = Tue Jul 01 12:20:00 2003
 
Submission date Feb 06, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 1940 41150 425.39743 95.764709 517.436035 193.160065 186.097076 15600 30.134266 0.959142 0.986465 0.994423 2.202305 0.587281 392.532837 79.073532 489.873718 194.535141 184.551254 13700 30.134266 0.944027 0.986458 0.993172 2.017799 0.53808 1 1 1 1 1 0 1 1 1 1 1 0 1 329.632721 313.459305 0.007442841 0.005299578 1.404421468 0.147497459
2 2190 41140 476.44577 186.867645 550.029602 693.466309 184.033096 16600 20.639147 0.949886 0.987671 0.993477 0.68705 0.183213 436.833344 102.470589 447.046997 401.515961 188.813965 15000 20.639147 0.965744 0.98568 0.996429 1.08796 0.290123 1 1 1 1 1 0 1 1 1 1 1 0 1 289.578125 334.362755 0.006538441 0.005652987 1.156634566 0.063196167
3 2430 41140 867.399048 55.5 805.879456 134.004181 187.969162 20800 19.230251 0.967168 0.976463 0.99527 6.472925 0.840056 758.120239 58 670.163635 146.317184 183.686844 18300 19.230251 0.952545 0.978905 0.995323 5.181348 0.847842 1 1 1 1 1 1 1 1 1 1 1 1 1 811.899048 700.120239 0.018332026 0.011836758 1.548737129 0.18997771
4 2700 41140 1178.108887 100.323532 1050.28186 192.630676 188.476501 20200 26.117931 0.961375 0.970749 0.994926 6.115894 0.839134 1164.12439 47.35294 990.333313 118.3647 185.239883 19300 26.117931 0.959405 0.970993 0.996986 9.835064 0.845018 1 1 1 1 1 1 1 1 1 1 1 1 1 1077.785355 1116.77145 0.024335525 0.018880975 1.288891281 0.110216286
5 2950 41140 1166.039551 50.5 1125.289551 137.971283 189.487106 20200 26.117931 0.964428 0.96804 0.99617 8.451321 0.837296 1198.369263 87.382355 1030.641357 238.210114 185.411636 19500 26.117931 0.964772 0.969955 0.991325 5.030724 0.844706 1 1 1 1 1 1 1 1 1 1 1 1 1 1115.539551 1110.986908 0.025187984 0.018783178 1.340986303 0.127424342
6 3200 41130 1130.828491 84.014709 1304.441528 181.161392 189.655014 20400 20.001167 0.96679 0.958786 0.994408 6.242105 0.836991 1199.529785 41.720589 1114.410645 118.24334 176.258484 18500 20.001167 0.933374 0.966553 0.995811 10.144586 0.861348 1 1 1 1 1 1 1 1 1 1 1 1 1 1046.813782 1157.809196 0.023636211 0.01957479 1.207482228 0.081880748
7 3440 41130 482.740753 67.058823 524.803223 137.692383 184.551254 16200 11.994782 0.952458 0.983139 0.996262 3.505937 0.818378 605.150696 42.794117 743.620056 101.649902 180.716904 14600 11.994782 0.949326 0.976883 0.9972 5.953284 0.853242 1 1 1 1 1 1 1 1 1 1 1 1 1 415.68193 562.356579 0.009385763 0.009507622 0.987183018 -0.005602324
8 3680 41130 780.275269 114.191177 829.457642 274.98996 185.925949 17800 9.364985 0.96095 0.974068 0.993233 2.837468 0.756658 699.27948 65.367645 685.899719 166.012665 184.551254 16100 9.364985 0.933107 0.979355 0.995857 4.212206 0.839027 1 1 1 1 1 0 1 1 1 1 1 1 1 666.084092 633.911835 0.015039642 0.010717389 1.403293495 0.147148512
9 3920 41120 1069.03833 101.088234 1270.186646 230.028854 190.659378 20900 12.224216 0.970295 0.963936 0.992775 4.64741 0.835165 1550.46521 46.470589 1748.29541 140.944733 187.460449 18700 12.224216 0.950983 0.950569 0.995033 11.000519 0.840981 1 1 1 1 1 1 1 1 1 1 1 1 1 967.950096 1503.994621 0.021855533 0.025427661 0.859518037 -0.065745005
10 4180 41120 863.903564 69.25 873.039856 140.406479 180.54068 19700 2.367134 0.938519 0.972763 0.996178 6.152875 0.853562 1245.635864 39.235294 3154.493652 104.396935 188.307541 18400 2.367134 0.962469 0.967651 0.996788 11.931728 0.839441 1 1 1 1 1 1 1 1 1 1 1 1 1 794.653564 1206.40057 0.017942637 0.020396312 0.879700041 -0.055665388
11 4420 41120 388.722961 124.558823 355.719452 244.304398 186.779999 14800 12.224216 0.960039 0.988937 0.99247 1.591142 0.424305 483.674255 34.911766 691.630066 111.867554 186.950348 13200 12.224216 0.951518 0.985306 0.996071 4.323633 0.841863 1 1 1 1 1 0 1 1 1 1 1 1 1 264.164138 448.762489 0.005964613 0.007587115 0.786150367 -0.104494379
12 4680 41120 258.86087 82.544121 286.829224 168.728729 186.097076 11500 2.367134 0.965925 0.992699 0.99498 1.534184 0.409116 272.925537 77.705879 271.171783 273.879059 180.89296 9400 2.367134 0.933329 0.991394 0.99073 0.996518 0.265738 1 1 1 1 1 0 1 1 1 1 1 0 1 176.316749 195.219658 0.00398109 0.00330053 1.206197245 0.081418332
13 4950 41120 636.691895 142.470581 688.945313 244.508728 190.157852 19800 17.83107 0.967967 0.984222 0.992645 2.603964 0.69439 749.637817 45.088234 656.203125 123.583527 181.068848 18500 17.83107 0.939696 0.980484 0.996796 6.065839 0.852602 1 1 1 1 1 0 1 1 1 1 1 1 1 494.221314 704.549583 0.011159119 0.011911643 0.936824455 -0.028341781
14 5190 41120 547.777222 135.647064 456.48407 488.502472 184.551254 19300 7.85972 0.957525 0.985023 0.990829 1.12134 0.299024 639.378052 52.64706 566.759827 129.590607 169.820145 16400 7.85972 0.920395 0.981659 0.996559 4.93383 0.85578 1 1 1 1 1 0 1 1 1 1 1 1 1 412.130158 586.730992 0.009305567 0.009919714 0.938088209 -0.027756323
15 5430 41120 1423.268433 84.588234 1583.923096 304.180328 192.817535 23100 2.367134 0.971354 0.947243 0.994774 4.679029 0.831241 1417.481812 44.411766 1588.313354 137.332062 180.716904 22000 2.367134 0.953202 0.947342 0.994774 10.321565 0.853242 1 1 1 1 1 1 1 1 1 1 1 1 1 1338.680199 1373.070046 0.03022632 0.023214152 1.302064376 0.114632457
16 5680 41110 794.23114 101.676468 738.718811 177.83696 186.779999 19900 11.113222 0.960486 0.976814 0.995148 4.466063 0.842218 841.494263 54.441177 779.259583 116.014717 182.12056 17400 11.113222 0.9555 0.978378 0.996986 7.253341 0.85069 1 1 1 1 1 1 1 1 1 1 1 1 1 692.554672 787.053086 0.015637326 0.01330651 1.175163645 0.070098348
17 5930 41110 731.346375 73.25 734.392456 175.970261 184.895889 17900 11.113222 0.957763 0.978806 0.994705 4.156079 0.837559 818.256775 45.676472 793.257385 116.467331 173.894928 14800 11.113222 0.943082 0.977348 0.995705 7.025633 0.865646 1 1 1 1 1 1 1 1 1 1 1 1 1 658.096375 772.580303 0.014859286 0.013061822 1.137612034 0.055994177
18 6170 41100 439.552155 100.955879 646.891479 209.558411 189.487106 16300 24.191574 0.959738 0.988739 0.994171 2.097516 0.559338 597.195801 51.205883 1445.840698 159.085876 171.127197 14300 24.191574 0.935905 0.963036 0.994118 3.753921 0.826205 1 1 1 1 1 0 1 1 1 1 1 1 1 338.596276 545.989918 0.007645231 0.009230915 0.828220287 -0.081854136
19 1950 41400 799.386719 50.720589 2033.826416 112.40078 190.492355 18100 34.121048 0.971303 0.951477 0.996803 7.111932 0.835468 665.93335 54.14706 1987.692139 139.295166 186.609512 18000 34.121048 0.958754 0.983742 0.99559 4.780736 0.842528 1 1 1 1 1 1 1 1 1 1 1 1 1 748.66613 611.78629 0.016904278 0.010343318 1.634318723 0.213336756
20 2200 41380 2214.169678 77.279411 2034.049805 176.619659 187.969162 21800 20.001167 0.959905 0.948853 0.995132 12.536372 0.840056 2819.04541 39.044117 2281.29248 116.768738 186.268051 19800 20.001167 0.951572 0.942123 0.996254 24.142125 0.843149 1 1 1 1 1 1 1 1 1 1 1 1 1 2136.890267 2780.001293 0.04824926 0.047000786 1.026562826 0.011385533

Total number of rows: 5184

Table truncated, full table size 1727 Kbytes.




Supplementary data files not provided
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