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Sample GSM16738 Query DataSets for GSM16738
Status Public on May 10, 2004
Title GC2_SARB33_LT2_2D725_719_2
Sample type genomic
 
Channel 1
Source name SARB33 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison SARB33/LT2
User - PCheng
Date_of_Scan = Thu Apr 24 15:11:15 2003
 
Submission date Feb 10, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2610 22660 2623.533447 23.661764 1679.287964 89.381393 185.411636 21000 40.756489 0.95954 0.959267 0.996628 29.352121 0.844706 2792.734863 24.955883 1890.463623 78.369469 183.166229 21500 45.290943 0.958562 0.951004 0.997559 35.635496 0.848789 1 1 1 1 1 1 1 1 1 1 1 1 1 2599.871683 2767.77898 0.010454349 0.015129592 0.690986852 -0.160530216
2 2860 22650 843.508118 29.102942 647.615906 100.26638 175.17157 18500 40.665516 0.948157 0.979446 0.99704 8.412671 0.863324 769.419373 32.985294 615.524902 97.293137 177.697342 18600 36.405312 0.950482 0.982048 0.997108 7.90826 0.858732 1 1 1 1 1 1 1 1 1 1 1 0 1 814.405176 736.434079 0.003274806 0.004025591 0.813496941 -0.089644076
3 3100 22650 7805.740234 27.970589 6188.546387 99.664658 176.619293 20800 30.751616 0.936785 0.865685 0.997154 78.320043 0.860692 5893.124512 79.808823 4378.131348 215.139053 184.033096 21700 27.115026 0.947152 0.898743 0.993866 27.392165 0.847213 1 1 1 1 1 1 1 1 1 1 1 1 1 7777.769645 5813.315689 0.031275205 0.031777499 0.984193393 -0.006919555
4 3360 22650 3109.131592 63.35294 2120.697021 169.64447 183.339935 20500 40.665516 0.944633 0.946007 0.994087 18.327338 0.848473 1994.787109 66.617645 1386.174072 138.822128 182.295258 20200 45.994225 0.935553 0.959831 0.996284 14.369374 0.850372 1 1 1 1 1 1 1 1 1 1 1 0 1 3045.778652 1928.169464 0.012247386 0.01054001 1.161990063 0.065202414
5 3610 22670 4545.39209 21.397058 2918.499268 77.625801 177.697342 22200 43.226135 0.941147 0.925438 0.997787 58.555171 0.858732 3355.4375 38.941177 2278.436035 92.77269 183.339935 22400 44.535034 0.952796 0.940788 0.997536 36.168376 0.848473 1 1 1 1 1 1 1 1 1 1 1 1 1 4523.995032 3316.496323 0.018191445 0.018129062 1.003441078 0.001491876
6 3860 22650 3548.421387 44.985294 2401.063721 112.193527 184.033096 24200 40.665516 0.961109 0.939209 0.997337 31.627684 0.847213 2473.922607 39.14706 1574.910522 130.143005 180.364288 22000 45.994225 0.940099 0.957413 0.996986 19.009263 0.853883 1 1 1 1 1 1 1 1 1 1 1 1 1 3503.436093 2434.775547 0.014087674 0.013309285 1.058484603 0.024684545
7 4090 22660 3410.702637 77.529411 2721.812256 191.530319 180.187729 19500 21.096128 0.950787 0.929192 0.994209 17.807638 0.854204 2603.098145 74.088234 2007.337524 160.153915 172.239624 20400 27.115026 0.926685 0.950516 0.995056 16.253728 0.868655 1 1 1 1 1 1 1 1 1 1 1 1 1 3333.173226 2529.009911 0.013403029 0.013824402 0.969519682 -0.01344337
8 4350 22660 3865.593994 25.220589 3037.188232 75.974236 185.411636 19700 30.871817 0.947875 0.92662 0.997971 50.880328 0.844706 2554.050537 73.102943 2280.333984 163.985184 189.319046 21800 36.405312 0.960746 0.944176 0.99572 15.574886 0.837602 1 1 1 1 1 1 1 1 1 1 1 1 1 3840.373405 2480.947594 0.015442533 0.013561677 1.138689037 0.05640514
9 4600 22660 3817.153809 28.191177 3289.70459 84.304047 184.205978 19500 30.871817 0.965049 0.919548 0.99733 45.278417 0.846898 2632.379883 86.955879 2374.809326 247.69754 179.302277 20000 24.558605 0.922919 0.940948 0.99379 10.627396 0.855814 1 1 1 1 1 1 1 1 1 1 1 1 1 3788.962632 2545.424004 0.015235805 0.013914126 1.094988262 0.039409464
10 4850 22660 2679.738037 47.573528 2612.620361 112.562592 184.205978 18700 30.871817 0.957636 0.932129 0.996925 23.806648 0.846898 1518.010742 58.029411 1558.731567 143.395386 181.42009 18600 24.558605 0.956078 0.956535 0.995209 10.58619 0.851963 1 1 1 1 1 1 1 1 1 1 1 0 1 2632.164509 1459.981331 0.010584202 0.007980739 1.32621826 0.122615003
11 5100 22660 2793.162354 27.014706 2421.31958 86.518997 186.609512 19700 30.871817 0.959886 0.932297 0.998123 32.283804 0.842528 2054.438232 24.470589 1669.371704 64.384453 172.793152 17800 18.576937 0.925731 0.954697 0.998177 31.908918 0.867649 1 1 1 1 1 1 1 1 1 1 1 1 1 2766.147648 2029.967643 0.011122962 0.011096472 1.002387215 0.001035519
12 5340 22670 2584.504639 65.044121 1699.553101 157.185837 182.64415 21400 25.543177 0.955563 0.953682 0.995972 16.442351 0.849738 1471.918457 88.441177 1195.227661 187.899261 191.990341 23300 16.760172 0.969819 0.965347 0.995155 7.833551 0.832745 1 1 1 1 1 1 1 1 1 1 1 1 1 2519.460518 1383.47728 0.010131008 0.007562543 1.339629808 0.126984802
13 5610 22670 7216.632813 89.852943 5252.401367 176.755188 185.067963 22600 43.226135 0.943581 0.879868 0.995163 40.828407 0.845331 4564.476074 43.926472 3393.602051 126.343445 185.067963 22900 36.405312 0.952409 0.917801 0.995537 36.127526 0.845331 1 1 1 1 1 1 1 1 1 1 1 1 1 7126.77987 4520.549602 0.028657508 0.024710814 1.159715288 0.064351382
14 5860 22670 2055.119141 40.279411 1692.630249 123.722954 179.302277 19300 43.226135 0.951797 0.949234 0.996246 16.610654 0.855814 1504.22522 41.088234 1126.100464 132.35228 184.895889 18200 36.405312 0.95535 0.967461 0.996719 11.365314 0.845644 1 1 1 1 1 1 1 1 1 1 1 0 1 2014.83973 1463.136986 0.008101876 0.007997989 1.01298915 0.005604794
15 6090 22650 7834.138672 71.102943 5065.436035 159.635986 184.378693 23800 20.919832 0.96301 0.860519 0.995621 49.075017 0.846584 6035.660645 45.573528 3760.810791 105.510178 181.945694 22100 16.760172 0.945023 0.89624 0.996895 57.204535 0.851008 1 1 1 1 1 1 1 1 1 1 1 1 1 7763.035729 5990.087117 0.031215958 0.03274379 0.953339797 -0.020752277
16 6350 22670 6136.568848 69.191177 4357.939941 158.371124 181.068848 20400 34.065765 0.956344 0.899719 0.995773 38.748029 0.852602 4290.92627 27.794117 3285.098877 80.806114 182.64415 20400 27.115026 0.970258 0.921944 0.997421 53.101505 0.849738 1 1 1 1 1 1 1 1 1 1 1 1 1 6067.377671 4263.132153 0.024397544 0.023303685 1.046939318 0.01992151
17 6600 22670 3246.031982 58.529411 2542.433594 119.549088 176.97937 18800 34.065765 0.945914 0.937508 0.997124 27.152294 0.860038 1488.547485 43.455883 1235.570923 106.289307 176.077789 17900 27.115026 0.934945 0.964485 0.996887 14.004678 0.861677 1 1 1 1 1 1 1 1 1 1 1 0 1 3187.502571 1445.091602 0.012817273 0.007899347 1.622573741 0.210204443
18 6850 22650 4624.163086 45.514706 2845.350098 127.063919 180.187729 22100 30.751616 0.953985 0.920853 0.99633 36.392417 0.854204 2871.209961 47.441177 1881.495728 137.103775 183.686844 21900 54.529728 0.963064 0.942589 0.995728 20.941874 0.847842 1 1 1 1 1 1 1 1 1 1 1 1 1 4578.64838 2823.768784 0.018411212 0.015435651 1.192772003 0.076557437
19 2600 22890 2703.942383 50.89706 2115.505615 168.586502 181.068848 19100 33.738029 0.946242 0.95089 0.996277 16.038902 0.852602 2156.591064 76.558823 1732.738281 203.292694 187.290573 20300 35.512638 0.946751 0.958656 0.994209 10.608306 0.84129 1 1 1 1 1 1 1 1 1 1 1 0 1 2653.045323 2080.032241 0.010668166 0.011370142 0.938261464 -0.027676121
20 2850 22900 4042.170166 32.485294 2925.879639 105.161354 180.364288 18800 30.751616 0.943706 0.925537 0.996796 38.437791 0.853883 2590.374512 48.955883 1970.828247 121.571236 185.583237 21100 45.290943 0.95454 0.948135 0.996437 21.307462 0.844394 1 1 1 1 1 1 1 1 1 1 1 1 1 4009.684872 2541.418629 0.016123352 0.013892232 1.160601987 0.06468331

Total number of rows: 5184

Table truncated, full table size 1744 Kbytes.




Supplementary data files not provided
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