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Sample GSM16739 Query DataSets for GSM16739
Status Public on May 10, 2004
Title GC2_SARB33_LT2_2D725_719_3
Sample type genomic
 
Channel 1
Source name SARB33 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison SARB33/LT2
User - PCheng
Date_of_Scan = Thu Apr 24 15:11:15 2003
 
Submission date Feb 10, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2440 41390 3260.211426 46.794117 2143.219971 130.538895 175.896927 19400 50.479641 0.928621 0.936172 0.995667 24.975019 0.862006 2063.104248 42.441177 1367.726929 119.230537 176.799423 19200 23.932116 0.933686 0.963768 0.99614 17.303489 0.860365 1 1 1 1 1 1 1 1 1 1 1 0 1 3213.417309 2020.663071 0.012694981 0.013139305 0.966183599 -0.014940339
2 2680 41390 757.186462 60.89706 584.898682 161.266922 181.068848 17700 41.126663 0.940996 0.984398 0.995781 4.695237 0.85064 364.828766 33.308823 362.659088 90.819527 182.295258 14600 25.638184 0.945668 0.990753 0.997124 4.017074 0.833806 1 1 1 1 1 1 1 1 1 1 1 0 1 696.289402 331.519943 0.002750773 0.002155699 1.276046682 0.105866563
3 2930 41410 9621.736328 184.352936 7088.006836 1121.3927 177.876389 19700 38.038914 0.949866 0.845055 0.992622 8.580167 0.858407 4564.995117 22.67647 3615.48291 97.422211 189.150833 20400 16.700985 0.963083 0.910683 0.996269 46.857848 0.837908 1 1 1 1 1 1 1 1 1 1 1 0 1 9437.383392 4542.318647 0.037283488 0.0295363 1.262293769 0.101160438
4 3180 41410 3492.034424 40.75 2337.211426 160.730728 184.895889 20300 38.038914 0.94561 0.943687 0.994598 21.725991 0.845644 1957.594238 57.838234 1379.299561 134.6595 179.302277 17500 33.928452 0.947381 0.962212 0.997337 14.537365 0.855814 1 1 1 1 1 1 1 1 1 1 1 0 1 3451.284424 1899.756004 0.013634703 0.01235311 1.103746559 0.042869363
5 3430 41400 4619.851074 27.455883 3278.145752 85.428932 186.609512 22800 38.329891 0.960757 0.919006 0.997383 54.078296 0.842528 3873.681396 16.852942 2449.488525 57.479202 175.353195 20400 35.588894 0.951679 0.93544 0.997917 67.392748 0.862994 1 1 1 1 1 1 1 1 1 1 1 1 1 4592.395191 3856.828454 0.018142795 0.02507892 0.72342809 -0.140604632
6 3680 41400 4293.257324 47.220589 3017.949463 149.637253 184.551254 23300 38.329891 0.964785 0.921638 0.99472 28.6911 0.84627 3462.004639 41.970589 2260.1875 138.769531 180.89296 21700 35.588894 0.942808 0.941841 0.995628 24.947873 0.852922 1 1 1 1 1 1 1 1 1 1 1 1 1 4246.036735 3420.03405 0.016774465 0.022238676 0.754292439 -0.122460246
7 3920 41410 4166.331543 47.544117 3384.342773 106.249557 181.945694 20200 28.109909 0.952327 0.919067 0.99675 39.212695 0.851008 3654.923584 31.058823 2923.085449 86.731163 178.055252 19600 13.941041 0.925043 0.927605 0.998184 42.140834 0.858081 1 1 1 1 1 1 1 1 1 1 1 0 1 4118.787426 3623.864761 0.016271752 0.02356408 0.690532038 -0.160816167
8 4170 41410 4772.52002 70.382355 3993.086182 165.684113 184.551254 20000 28.109909 0.952174 0.912285 0.995522 28.804935 0.84627 3970.644043 51.691177 2932.64917 178.317108 175.17157 17700 23.932116 0.932209 0.930504 0.993469 22.26732 0.863324 1 1 1 1 1 1 1 1 1 1 1 1 1 4702.137665 3918.952866 0.018576345 0.025482882 0.728973493 -0.137288263
9 4420 41410 4434.274414 52.588234 3787.916016 154.237778 178.055252 18600 28.109909 0.93393 0.910332 0.994789 28.7496 0.858081 4066.131104 28.397058 3550.820557 85.418045 178.768906 18300 13.941041 0.936228 0.90831 0.997566 47.602718 0.856784 1 1 1 1 1 1 1 1 1 1 1 0 1 4381.68618 4037.734046 0.017310364 0.026255253 0.659310507 -0.180910003
10 4670 41420 2885.037354 89.014709 2838.584961 192.356598 177.33873 18800 31.111818 0.932218 0.929756 0.994209 14.99838 0.859384 2473.984619 28.485294 2669.838135 91.872475 189.150833 19400 16.700985 0.953362 0.931816 0.996696 26.928464 0.837908 1 1 1 1 1 1 1 1 1 1 1 0 1 2796.022645 2445.499325 0.011046015 0.015901791 0.694639658 -0.158240426
11 4920 41410 3187.404053 83.823532 2758.831055 160.899979 181.244553 19800 28.109909 0.954689 0.92482 0.995651 19.809848 0.852283 3921.661377 31.911764 2970.990723 76.714188 178.41243 18600 16.700985 0.958643 0.931076 0.997902 51.120419 0.857432 1 1 1 1 1 1 1 1 1 1 1 0 1 3103.580521 3889.749613 0.012261058 0.025292988 0.484761151 -0.314472192
12 5180 41420 2629.264893 144.338242 2041.10791 308.397949 189.319046 23400 40.308029 0.961614 0.944633 0.99205 8.525559 0.837602 2127.815674 16.779411 1482.835571 55.079819 185.067963 21700 16.700985 0.953315 0.958611 0.99826 38.631494 0.845331 1 1 1 1 1 1 1 1 1 1 1 0 1 2484.926651 2111.036263 0.009816994 0.013726954 0.715161814 -0.145595683
13 5430 41420 9113.604492 43.132355 6519.598145 112.192253 178.41243 21000 40.308029 0.929838 0.848572 0.996391 81.23203 0.857432 6146.878418 27.92647 4188.244141 116.848587 177.159134 20600 25.638184 0.936164 0.900772 0.99659 52.605501 0.859711 1 1 1 1 1 1 1 1 1 1 1 1 1 9070.472137 6118.951948 0.035833962 0.039788315 0.900615232 -0.045460712
14 5680 41410 2542.940918 24.25 1908.740356 64.155914 183.860046 18600 38.038914 0.949373 0.951515 0.998199 39.63689 0.847527 2213.715088 41.044117 1667.712402 108.999855 183.339935 18600 25.638184 0.937373 0.954605 0.99617 20.30934 0.848473 1 1 1 1 1 1 1 1 1 1 1 0 1 2518.690918 2172.670971 0.009950383 0.014127732 0.704315671 -0.152232649
15 5940 41430 7943.810059 51.132355 5587.70166 112.497284 188.813965 23700 53.472492 0.960187 0.856613 0.996674 70.61335 0.83852 7315.105469 27.470589 4758.12207 86.49691 186.609512 23700 13.941041 0.957022 0.882362 0.997108 84.570714 0.842528 1 1 1 1 1 1 1 1 1 1 1 0 1 7892.677704 7287.63488 0.031180947 0.047387643 0.657997434 -0.1817758
16 6180 41420 6689.075195 56.161766 5517.364746 167.727097 187.799744 22600 40.308029 0.961574 0.87307 0.994247 39.880707 0.840364 5089.397949 36.941177 3991.195557 130.013184 181.595459 20600 16.700985 0.955487 0.903992 0.998032 39.145245 0.851645 1 1 1 1 1 1 1 1 1 1 1 1 1 6632.913429 5052.456772 0.026204101 0.032853459 0.797605536 -0.098211841
17 6430 41420 4224.537109 76.147057 3486.126465 217.007553 176.619293 18800 40.308029 0.949421 0.915237 0.99231 19.467235 0.860692 3067.544434 49.235294 2480.449951 124.519386 179.302277 18000 25.638184 0.950804 0.943535 0.996819 24.635075 0.855814 1 1 1 1 1 1 1 1 1 1 1 0 1 4148.390052 3018.30914 0.016388701 0.019626471 0.83503043 -0.078297698
18 6690 41410 4528.803711 24.411764 3095.429443 78.502823 190.157852 22900 47.997406 0.964383 0.909691 0.997971 57.689692 0.836077 4124.247559 54.985294 2606.622803 184.833237 181.945694 21400 25.638184 0.93659 0.929581 0.994377 22.313344 0.851008 1 1 1 1 1 1 1 1 1 1 1 1 1 4504.391947 4069.262265 0.017795128 0.026460265 0.672522671 -0.172293071
19 2430 41640 3080.467773 46.691177 2383.278076 102.724419 182.992371 18600 41.126663 0.937228 0.945137 0.997444 29.987688 0.849105 1520.972168 22.352942 1192.818481 78.371819 181.42009 18000 35.588894 0.947045 0.970291 0.997047 19.407131 0.851963 1 1 1 1 1 1 1 1 1 1 1 0 1 3033.776596 1498.619226 0.01198529 0.00974473 1.229925295 0.089878734
20 2670 41640 4430.178223 41.573528 3148.997803 143.826324 181.068848 18500 32.165359 0.957511 0.922844 0.997269 30.802277 0.852602 1500.883301 27.25 1219.452637 85.456001 182.64415 18000 35.588894 0.946034 0.965965 0.997093 17.563229 0.849738 1 1 1 1 1 1 1 1 1 1 1 0 1 4388.604695 1473.633301 0.017337697 0.009582259 1.809353701 0.257523473

Total number of rows: 5184

Table truncated, full table size 1743 Kbytes.




Supplementary data files not provided
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