|
| Status |
Public on May 01, 2018 |
| Title |
RA patient, bio rep 2 [110-459.2] |
| Sample type |
RNA |
| |
|
| Source name |
rhuetmoid arthritis (RA) patient
|
| Organism |
Homo sapiens |
| Characteristics |
subject status: rhuetmoid arthritis (RA) patient
gender: F
age: 64
das28: 3.05
das29: whole blood
|
| Treatment protocol |
Whole blood samples were acuqired with constent through a commerical biobank (Biooptions).
|
| Extracted molecule |
total RNA |
| Extraction protocol |
The RNA was isolated using Paxgene Blood mRNA kit from Qiagen and then used Agilent 2100 Bioanalyzer to evaluate the RNA integrity.
|
| Label |
biotin
|
| Label protocol |
The RNA samples were labeled with GeneChip WT Plus Reagent Kit.
|
| |
|
| Hybridization protocol |
The fragemented and biotion labeled ss-DNA samples were hybridized in HTA.
|
| Scan protocol |
The standard Affymetrix protocol
|
| Data processing |
The data was processed using justRMA from Bioconductor with a custom cdf (brainarray) and is in terms of EGIDs.
|
| |
|
| Submission date |
May 08, 2015 |
| Last update date |
May 01, 2018 |
| Contact name |
Ty Thomson |
| Organization name |
Selventa
|
| Street address |
1 Alewife Center
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02140 |
| Country |
USA |
| |
|
| Platform ID |
GPL20171 |
| Series (1) |
| GSE68689 |
Gene expression from the whole blood of rheumatoid arthritis patients and normal controls. |
|
