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Sample GSM16890 Query DataSets for GSM16890
Status Public on May 10, 2004
Title GC2_020150_LT2_2D655b_2
Sample type genomic
 
Channel 1
Source name 020150 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Oranienburg; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Oranienburg; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison 020150/LT2
User - PCheng
Date_of_Scan = Sat Mar 15 13:34:45 2003
 
Submission date Feb 13, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 1830 22050 4404.577148 164.352936 4171.941406 335.544739 187.460449 20800 7.324068 0.963128 0.895355 0.989738 13.126646 0.840981 3844.20752 69.514709 2691.468262 214.787674 171.127197 15900 7.324068 0.95007 0.935562 0.992233 17.89771 0.870678 1 1 1 1 1 1 1 1 1 1 1 1 1 4240.224212 3774.692811 0.023907676 0.020587485 1.161272301 0.064934067
2 2080 22050 1741.35791 194.058823 1726.483521 381.014435 186.438858 17600 7.324068 0.957549 0.952126 0.989487 4.57032 0.842838 1477.323486 21.264706 1183.083862 77.103462 180.89296 13600 7.324068 0.952134 0.97023 0.996796 19.160274 0.852922 1 1 1 1 1 1 1 1 1 1 1 1 1 1547.299087 1456.05878 0.008724144 0.007941464 1.098556053 0.040822221
3 2330 22050 7882.129883 98.058823 7541.768066 254.58728 190.157852 20800 7.324068 0.966652 0.833145 0.990685 30.960423 0.836077 6825.321777 9.514706 5382.074219 39.36454 178.946869 17400 7.324068 0.919658 0.882362 0.998604 173.387566 0.85646 1 1 1 1 1 1 1 1 1 1 1 1 1 7784.07106 6815.807071 0.043888963 0.037173972 1.180636927 0.072116363
4 2580 22050 3618.198975 209.411758 3149.963867 354.500214 188.813965 19600 7.324068 0.961765 0.920975 0.989723 10.206479 0.83852 3428.118408 27.794117 2616.274658 150.395264 170.568253 16900 7.324068 0.918054 0.936493 0.996391 22.794058 0.871694 1 1 1 1 1 1 1 1 1 1 1 1 1 3408.787217 3400.324291 0.019219781 0.018545648 1.03634991 0.015506414
5 2830 22050 6671.422852 222.632355 6083.047363 438.67099 183.860046 20100 7.324068 0.96214 0.864449 0.987473 15.208261 0.847527 5180.572266 25.17647 4257.581543 94.123917 181.42009 18000 7.324068 0.923872 0.898972 0.996803 55.039914 0.851963 1 1 1 1 1 1 1 1 1 1 1 1 1 6448.790497 5155.395796 0.036360245 0.028117952 1.293132761 0.111643115
6 3090 22050 4836.105957 169.764709 4478.615234 498.743011 183.686844 18900 17.318657 0.969646 0.887726 0.985809 9.696589 0.847842 4656.628906 15.573529 3654.991943 86.187111 175.17157 15900 17.318657 0.91467 0.915787 0.998299 54.029296 0.863324 1 1 1 1 1 1 1 1 1 1 1 1 1 4666.341248 4641.055377 0.026310253 0.025312697 1.039409315 0.016786605
7 3340 22060 5911.942383 104.132355 6005.961426 287.369263 185.583237 20900 19.812336 0.942347 0.866814 0.992706 20.572633 0.844394 4917.941406 15.617647 3952.7146 54.933075 180.364288 17100 19.812336 0.938258 0.908318 0.998657 89.526053 0.853883 1 1 1 1 1 1 1 1 1 1 1 1 1 5807.810028 4902.323759 0.032746202 0.026737676 1.224721304 0.088037272
8 3580 22060 6519.484375 142.279419 6268.855469 353.35379 184.551254 19200 12.092755 0.950309 0.84684 0.98748 18.450303 0.84627 4791.138672 44.661766 3873.709961 238.655045 170.754776 17300 12.092755 0.926756 0.908188 0.99762 20.075581 0.871355 1 1 1 1 1 1 1 1 1 1 1 1 1 6377.204956 4746.476906 0.035956624 0.025887675 1.388947602 0.142685862
9 3830 22050 3515.549316 120.75 3225.27417 268.701202 185.239883 19300 7.324068 0.960705 0.917343 0.992081 13.083489 0.845018 4751.236816 30.485294 3742.689697 179.806076 178.233932 17300 7.324068 0.924819 0.917488 0.997719 26.424228 0.857756 1 1 1 1 1 1 1 1 1 1 1 1 1 3394.799316 4720.751522 0.019140913 0.025747366 0.743412439 -0.128770176
10 4080 22050 4798.508301 179 4386.088867 394.131439 180.364288 18500 7.324068 0.939031 0.88092 0.987007 12.174894 0.853883 4721.676758 34.470589 3722.176758 113.155876 179.479706 16400 7.324068 0.939204 0.911331 0.995911 41.72719 0.855491 1 1 1 1 1 1 1 1 1 1 1 1 1 4619.508301 4687.206169 0.026046195 0.025564407 1.018846024 0.008108555
11 4340 22050 3283.854248 140.176468 3083.881592 274.862671 186.268051 19200 17.318657 0.954957 0.918221 0.991798 11.947254 0.843149 3799.849121 20.838236 2902.364014 86.317635 175.715866 15900 17.318657 0.936932 0.934677 0.996811 44.021701 0.862335 1 1 1 1 1 1 1 1 1 1 1 1 1 3143.67778 3779.010885 0.017725013 0.020611036 0.859976814 -0.065513258
12 4580 22040 2903.038574 135.735291 2401.53833 311.152252 186.097076 20700 12.690516 0.960257 0.934311 0.994217 9.329962 0.84346 2731.17749 17.82353 1835.919678 71.303001 174.260635 16900 12.690516 0.913948 0.954453 0.997253 38.303822 0.864981 1 1 1 1 1 1 1 1 1 1 1 1 1 2767.303283 2713.35396 0.015602899 0.014798855 1.054331462 0.022977166
13 4830 22050 7284.77832 174.691177 7674.517578 368.627319 186.438858 21200 7.324068 0.960869 0.812538 0.988052 19.761906 0.842838 6463.371094 17.92647 5982.469727 64.917931 185.754669 18600 7.324068 0.955656 0.85881 0.997993 99.562186 0.844082 1 1 1 1 1 1 1 1 1 1 1 1 1 7110.087143 6445.444624 0.040088837 0.035153984 1.140378187 0.057048902
14 5080 22050 3423.197021 105 3220.942627 243.07077 189.487106 20300 7.324068 0.970875 0.925545 0.994408 14.083129 0.837296 2833.514404 31.102942 2480.331787 74.432205 177.518127 17500 7.324068 0.947924 0.940376 0.997665 38.068393 0.859058 1 1 1 1 1 1 1 1 1 1 1 1 1 3318.197021 2802.411462 0.018709005 0.015284582 1.224044278 0.087797128
15 5330 22050 5250.753418 254.573532 4562.894531 463.430206 189.487106 22700 7.324068 0.964568 0.886215 0.985817 11.330192 0.837296 5588.568359 29.17647 3925.03125 80.055939 173.34491 19000 7.324068 0.941514 0.899574 0.997856 69.808292 0.866646 1 1 1 1 1 1 1 1 1 1 1 1 1 4996.179886 5559.391889 0.028169984 0.03032138 0.929046897 -0.031962363
16 5580 22060 5353.683105 221.235291 5007.321777 477.462738 190.492355 22400 12.092755 0.9681 0.88604 0.988625 11.212777 0.835468 4094.134766 31.338236 3268.266357 91.813667 185.067963 19300 12.092755 0.957651 0.922989 0.997948 44.591779 0.845331 1 1 1 1 1 1 1 1 1 1 1 1 1 5132.447814 4062.79653 0.028938304 0.022158826 1.305949336 0.115926329
17 5830 22060 3049.989502 133 2990.389648 372.187958 189.150833 19200 12.092755 0.958129 0.924065 0.994064 8.194756 0.837908 2093.923584 42.691177 1835.282959 117.302681 184.723648 17000 12.092755 0.952454 0.950157 0.996315 17.850603 0.845957 1 1 1 1 1 1 1 1 1 1 1 1 1 2916.989502 2051.232407 0.016446875 0.01118759 1.470099929 0.167346856
18 6080 22050 3750.608643 101.911766 3462.694092 230.557327 187.290573 20700 7.324068 0.952927 0.915573 0.993484 16.267575 0.84129 3562.521484 35.970589 2905.108398 134.737106 182.64415 18600 7.324068 0.941757 0.932007 0.996857 26.440537 0.849738 1 1 1 1 1 1 1 1 1 1 1 1 1 3648.696877 3526.550895 0.020572464 0.019234098 1.069582993 0.029214489
19 1840 22300 3760.659424 114 4059.805664 299.512634 185.067963 18500 17.318657 0.958323 0.899437 0.990242 12.555929 0.845331 2704.789551 11.485294 2497.170654 47.469864 169.632599 15200 17.318657 0.922442 0.941383 0.998138 56.979088 0.873395 1 1 1 1 1 1 1 1 1 1 1 1 1 3646.659424 2693.304257 0.020560977 0.014689503 1.399705428 0.146036647
20 2090 22300 4578.430664 131.75 5444.143066 251.640366 192.982544 19500 17.318657 0.974707 0.853676 0.992332 18.194341 0.830941 4327.29248 16.132353 4122.759766 58.492226 171.869614 14700 17.318657 0.928021 0.901894 0.998428 73.980643 0.869328 1 1 1 1 1 1 1 1 1 1 1 1 1 4446.680664 4311.160127 0.02507174 0.023513421 1.066273578 0.027868648

Total number of rows: 5184

Table truncated, full table size 1742 Kbytes.




Supplementary data files not provided
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