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Sample GSM169459 Query DataSets for GSM169459
Status Public on Apr 20, 2007
Title ESC_Zfx-null_Replicate1
Sample type RNA
 
Source name ESC Cultured in 15% KO + LIF without feeders
Organism Mus musculus
Characteristics Zfx-null TC1 ESC
Cultured in 15% KO + LIF without feeders
Extracted molecule total RNA
Extraction protocol QIAGEN RNeasy protocol
Label Biotin
Label protocol Ambion MessageAmp II aRNA protocol
Single-round amplification and labeling
 
Hybridization protocol Hybridization performed on a Affymetrix FS450/250 Fluidics Station using the FS450_0002 script.
Scan protocol Array scanning and raw data processing were done using
GCOS 1.4 software (Affymetrix)
Description Murine Zfx-null ESC Replicate1
Data processing Array scanning and raw data processing were done using
GCOS 1.4 software (Affymetrix)
 
Submission date Feb 19, 2007
Last update date Aug 28, 2018
Contact name Jose M Galan
Organization name Columbia University Medical Center
Street address 701 W 168th St Room 609
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platform ID GPL1261
Series (1)
GSE7069 Zfx controls the self-renewal of embryonic and hematopoietic stem cells
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE VALUE
ABS_CALL ABS_CALL
DETECTION P-VALUE DETECTION-P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 163.039 P 0.000296708
AFFX-BioB-M_at 239.51 P 7.00668e-05
AFFX-BioB-3_at 116.412 P 0.000224668
AFFX-BioC-5_at 599.965 P 5.16732e-05
AFFX-BioC-3_at 462.984 P 4.42873e-05
AFFX-BioDn-5_at 878.547 P 4.42873e-05
AFFX-BioDn-3_at 2445.48 P 8.14279e-05
AFFX-CreX-5_at 5640.09 P 5.16732e-05
AFFX-CreX-3_at 6508.92 P 4.42873e-05
AFFX-DapX-5_at 391.531 P 7.00668e-05
AFFX-DapX-M_at 656.184 P 0.000389797
AFFX-DapX-3_at 602.454 P 6.02111e-05
AFFX-LysX-5_at 48.7408 P 0.000224668
AFFX-LysX-M_at 83.9448 P 0.002867
AFFX-LysX-3_at 157.078 P 6.02111e-05
AFFX-PheX-5_at 79.9909 P 0.00255552
AFFX-PheX-M_at 73.6441 P 0.000753643
AFFX-PheX-3_at 93.619 P 0.000224668
AFFX-ThrX-5_at 88.816 P 0.000581214
AFFX-ThrX-M_at 102.565 P 0.000169227

Total number of rows: 45101

Table truncated, full table size 1383 Kbytes.




Supplementary file Size Download File type/resource
GSM169459.CEL.gz 3.9 Mb (ftp)(http) CEL
GSM169459.CHP.gz 242.0 Kb (ftp)(http) CHP
Processed data provided as supplementary file

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