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Sample GSM173203 Query DataSets for GSM173203
Status Public on Mar 16, 2007
Title PBMC_InfluenzaA_INF087
Sample type RNA
 
Source name PBMC_Influenza
Organism Homo sapiens
Characteristics Age: 19m, when sample taken
Gender: F
Race: Caucasian
Illness: Fever
Treatment: Cefuroxime
Pathogen: Influenza A
Extracted molecule total RNA
Extraction protocol RNeasy mini
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol EukGE-WS2v4
Scan protocol GeneChips were scanned using the Agilent GeneArray 2500 Scanner.
Description The subject was infected with Influenza A.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Mar 06, 2007
Last update date Nov 14, 2018
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL96
Series (1)
GSE6269 Gene expression patterns in blood leukocytes discriminate patients with acute infections
Relations
Reanalyzed by GSE122505

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 428.7 P
AFFX-BioB-M_at 1032.7 P
AFFX-BioB-3_at 432.2 P
AFFX-BioC-5_at 1467 P
AFFX-BioC-3_at 1170.9 P
AFFX-BioDn-5_at 1466 P
AFFX-BioDn-3_at 7788.6 P
AFFX-CreX-5_at 14353.1 P
AFFX-CreX-3_at 19151.3 P
AFFX-DapX-5_at 40.2 A
AFFX-DapX-M_at 11.1 A
AFFX-DapX-3_at 5.8 A
AFFX-LysX-5_at 11.9 A
AFFX-LysX-M_at 10.6 A
AFFX-LysX-3_at 13.8 A
AFFX-PheX-5_at 2.4 A
AFFX-PheX-M_at 7.9 A
AFFX-PheX-3_at 57.2 A
AFFX-ThrX-5_at 15.4 A
AFFX-ThrX-M_at 20.2 A

Total number of rows: 22283

Table truncated, full table size 402 Kbytes.




Supplementary file Size Download File type/resource
GSM173203.CEL.gz 3.4 Mb (ftp)(http) CEL

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