|
| Status |
Public on Mar 16, 2007 |
| Title |
PBMC_S.pneumoniae_INF277_j4695042 |
| Sample type |
RNA |
| |
|
| Source name |
PBMC_S. pneumoniae
|
| Organism |
Homo sapiens |
| Characteristics |
Age: 16y, when sample taken
Gender: M
Race: Caucasian
Illness: Pneumonia/Empyema
Treatment: Ceftriaxone/Vancomycin
Pathogen: S. pneumoniae
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNeasy mini
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
|
| |
|
| Hybridization protocol |
EukGE-WS2v5
|
| Scan protocol |
GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 System.
|
| Description |
The subject was infected with S. pneumoniae.
|
| Data processing |
The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
|
| |
|
| Submission date |
Mar 06, 2007 |
| Last update date |
Nov 14, 2018 |
| Contact name |
Damien Chaussabel |
| E-mail(s) |
[email protected]
|
| Organization name |
Baylor Institute for Immunology Research
|
| Street address |
3434 Live Oak
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75204 |
| Country |
USA |
| |
|
| Platform ID |
GPL96 |
| Series (1) |
| GSE6269 |
Gene expression patterns in blood leukocytes discriminate patients with acute infections |
|
| Relations |
| Reanalyzed by |
GSE122505 |
