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Sample GSM173291 Query DataSets for GSM173291
Status Public on Mar 16, 2007
Title PBMC_S.aureus_MSSA_INF459
Sample type RNA
 
Source name PBMC_S. aureus
Organism Homo sapiens
Characteristics Age: 10y, when sample taken
Gender: F
Race: Caucasian
Illness: Osteoarthritis/Suppurative arthritis
Treatment: Oxacillin/Rifampin
Pathogen: S. aureus, MSSA
Extracted molecule total RNA
Extraction protocol RNeasy mini
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridize 6-Sample Beadchip
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description The subject was infected with S. aureus, MSSA.
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Mar 06, 2007
Last update date Mar 16, 2007
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL2507
Series (1)
GSE6269 Gene expression patterns in blood leukocytes discriminate patients with acute infections

Data table header descriptions
ID_REF
VALUE Normalized value from BeadStudio software
p-value p-value from BeadStudio

Data table
ID_REF VALUE p-value
GI_10047089-S 3.4 0.644034
GI_10047091-S -3.8 0.356625
GI_10047093-S 117.5 1
GI_10047099-S -4.6 0.332235
GI_10047103-S 941.5 1
GI_10047105-S -6 0.275544
GI_10047121-S -5.3 0.301252
GI_10047123-S 113.9 1
GI_10047133-A 3.9 0.660514
GI_10047133-I 22.3 0.969018
GI_10092578-S -6.7 0.25445
GI_10092585-S 45.6 0.998682
GI_10092596-S 156.3 1
GI_10092600-S 228.6 1
GI_10092602-S 0.8 0.546473
GI_10092603-S 9.8 0.831905
GI_10092611-A 210.4 1
GI_10092616-S 27.2 0.98352
GI_10092618-S 4374.6 1
GI_10092638-S 13.1 0.891233

Total number of rows: 47292

Table truncated, full table size 1180 Kbytes.




Supplementary file Size Download File type/resource
GSM173291.txt.gz 329.0 Kb (ftp)(http) TXT

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