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Sample GSM173317 Query DataSets for GSM173317
Status Public on Mar 16, 2007
Title PBMC_InfluenzaB_INF549
Sample type RNA
 
Source name PBMC_Influenza
Organism Homo sapiens
Characteristics Age: 13y, when sample taken
Gender: F
Race: Hispanic
Illness: Fever
Treatment: Ceftriaxone/Vancomycin/Oseltamivir
Pathogen: Influenza B
Extracted molecule total RNA
Extraction protocol RNeasy mini
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol EukGE-WS2v5_450
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 System.
Description The subject was infected with Influenza B.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Mar 06, 2007
Last update date Nov 30, 2020
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL570
Series (1)
GSE6269 Gene expression patterns in blood leukocytes discriminate patients with acute infections
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087
Reanalyzed by GSE122511
Reanalyzed by GSE162329

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1180.2 P
AFFX-BioB-M_at 2104.2 P
AFFX-BioB-3_at 1252.7 P
AFFX-BioC-5_at 3198.8 P
AFFX-BioC-3_at 3990.5 P
AFFX-BioDn-5_at 8073.3 P
AFFX-BioDn-3_at 14946.3 P
AFFX-CreX-5_at 40636.1 P
AFFX-CreX-3_at 51137.3 P
AFFX-DapX-5_at 2.6 A
AFFX-DapX-M_at 42.2 A
AFFX-DapX-3_at 15.4 A
AFFX-LysX-5_at 2.5 A
AFFX-LysX-M_at 11.7 A
AFFX-LysX-3_at 11.6 A
AFFX-PheX-5_at 10.6 A
AFFX-PheX-M_at 2.5 A
AFFX-PheX-3_at 36.3 A
AFFX-ThrX-5_at 9.9 A
AFFX-ThrX-M_at 33 A

Total number of rows: 54675

Table truncated, full table size 968 Kbytes.




Supplementary file Size Download File type/resource
GSM173317.CEL.gz 4.8 Mb (ftp)(http) CEL

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