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Sample GSM174905 Query DataSets for GSM174905
Status Public on Feb 20, 2008
Title T9 BAL Urethane Treated
Sample type RNA
 
Source name A/J mouse (Jackson Labs) bronchoalveolar lavage cells
Organism Mus musculus
Characteristics Age matched Control, no treatment
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 to 5 microg total RNA
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip MOE430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Description Gene expression data from normal mouse lung tissue
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method arbitrarily set to 500
 
Submission date Mar 13, 2007
Last update date Aug 28, 2018
Contact name Robert S Stearman
E-mail(s) [email protected]
Phone 303-315-2317
Fax 303-315-5632
Organization name UCHSC
Department Medicine/Pulmonary
Lab Stearman
Street address 4200 E Ninth Ave
City Denver
State/province CO
ZIP/Postal code 80262
Country USA
 
Platform ID GPL1261
Series (2)
GSE7258 Expression data of bronchoalveolar lavage cells from control or urethane treated AJ mice
GSE7269 AJ mouse lung carcinogenesis study
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 459.08084 P 4.46E-04
AFFX-BioB-M_at 920.86865 P 4.43E-05
AFFX-BioB-3_at 596.6557 P 6.02E-05
AFFX-BioC-5_at 2330.079 P 4.43E-05
AFFX-BioC-3_at 2309.6924 P 4.43E-05
AFFX-BioDn-5_at 4253.2446 P 4.43E-05
AFFX-BioDn-3_at 8521.618 P 4.43E-05
AFFX-CreX-5_at 24681.996 P 5.17E-05
AFFX-CreX-3_at 31774.31 P 4.43E-05
AFFX-DapX-5_at 8.767853 A 0.36842665
AFFX-DapX-M_at 22.8064 A 0.30060634
AFFX-DapX-3_at 31.82828 A 0.19526644
AFFX-LysX-5_at 6.2375145 A 0.6315623
AFFX-LysX-M_at 2.4507115 A 0.97810733
AFFX-LysX-3_at 4.643875 A 0.65933883
AFFX-PheX-5_at 1.5259286 A 0.99551916
AFFX-PheX-M_at 3.191447 A 0.88388723
AFFX-PheX-3_at 34.13798 A 0.38259923
AFFX-ThrX-5_at 9.73597 A 0.7371734
AFFX-ThrX-M_at 1.4309274 A 0.9105219

Total number of rows: 45101

Table truncated, full table size 1422 Kbytes.




Supplementary file Size Download File type/resource
GSM174905.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM174905.EXP.gz 363 b (ftp)(http) EXP
Processed data included within Sample table

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