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Sample GSM176904 Query DataSets for GSM176904
Status Public on Mar 24, 2007
Title Dicer T00312746_15452_3
Sample type RNA
 
Source name Dicer mutant embryonic heart
Organism Mus musculus
Characteristics embryonic day 11.5 heart
Extracted molecule total RNA
Extraction protocol For RNA isolation, embryonic heart was dissected out and lysed using QiaShredder. RNA was isolated using RNeasy micro columns following the manufacturer's instructions, and including an on-column DNase digestion step.
Label biotin
Label protocol CodeLink Expression Assay protocol
 
Hybridization protocol CodeLink Expression Assay protocol
Scan protocol CodeLink Expression Assay protocol
Description Dicer mutant experimental group
Data processing GeneSpring analysis
 
Submission date Mar 22, 2007
Last update date Oct 30, 2008
Contact name Ankang Li
E-mail(s) [email protected]
Organization name IBT
Department CMDD
Street address 2121 West Holcombe
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL5025
Series (1)
GSE7343 Dicer conditional knockout embryonic heart mutant vs control array

Data table header descriptions
ID_REF
RAW_INTENSITY raw signal intensity
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag G=Good signal; L=Limit signal; I=Irregular shape; S=Saturated signal; M=MSR spot; C=Background contaminated; X=User excluded spots
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
UNF_VALUE Normalized signal

Data table
ID_REF RAW_INTENSITY VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1 8396.5029 101.3718 G 128.5396 8435.5029 4182 8983.1934 169 14.6689291 65.62573837 43.6917 39 17.7505 124 101.3718
2 1486.5042 17.9467 G 26.1615 1523.5042 1825 883.2524 121 12.41217041 58.23467419 40.7333 37 14.1565 109 17.9467
3 28.2927 0.3416 G 1.1471 64.2927 58 30.3084 41 7.225152016 56.0497479 38.1364 36 13.3665 160 0.3416
4 212.8523 2.5698 G 4.2343 249.8523 259 93.7974 88 10.58513451 59.00686062 40.7857 37 14.6712 188 2.5698
5 118.3467 1.4288 G 2.6907 155.3467 141 62.3986 75 9.772049904 57.73550844 40.5698 37 13.8237 178 1.4288
6 12.3729 L 0.8322 48.3729 44 21.6481 59 8.667244911 58.12642469 39.8636 36 14.7509 114 0.1494
7 8255.7676 99.6727 G 139.7254 8293.7676 3493 9214.4902 174 14.88434315 59.35762152 41.4828 38 14.2384 120 99.6727
8 7987.7583 96.437 G 130.9679 8026.7583 2779 8834.251 155 14.04820728 61.28799841 42.3083 39 14.8587 124 96.437
9 438.1613 5.29 G 8.2889 475.1613 485 212.2965 93 10.88169479 57.32506138 39.7831 37 13.55 172 5.29
10 126.625 1.5288 G 2.9178 163.625 159 57.1387 80 10.09253025 56.07913621 39.1229 37 12.7194 185 1.5288
11 49.0517 0.5922 G 1.4971 87.0517 84 38.7634 58 8.59348011 58.14499023 41.1758 38 13.43 188 0.5922
12 8290.377 100.0906 G 132.1579 8328.377 3339 8901.0957 148 13.72732544 63.01838242 42.7833 38 16.6789 124 100.0906
13 7797.7485 94.143 G 123.6908 7835.7485 2588 8731.4736 161 14.31752682 63.34950709 42.4667 38 16.8997 124 94.143
14 7.4035 L 0.7634 43.4035 41 16.1374 57 8.519076347 56.8518209 39.6633 36 13.9012 102 0.0894
15 12.25 L 0.8839 49.25 47 20.532 96 11.05581284 55.71762848 39.7105 37 12.4784 196 0.1479
16 37.9365 0.458 G 1.3136 76.9365 78 27.342 63 8.956232071 58.5695693 40.1446 39 13.0464 172 0.458
17 16.8462 L 0.9365 53.8462 46 21.4972 39 7.04672575 57.49440873 41.3278 37 13.6629 186 0.2034
18 7907.9746 95.4738 G 134.2756 7945.9746 2864 8897.5283 160 14.27299309 59.17660661 40.9717 38 14.1177 110 95.4738
19 7617.2998 91.9644 G 130.7039 7654.2998 2610 8691.2549 162 14.36192226 58.56214322 40.6404 37 14.3748 118 91.9644
20 1.8491 L 0.7115 41.8491 36 18.0004 53 8.214724541 58.81802577 42.0556 40 12.5454 92 0.0223

Total number of rows: 36227

Table truncated, full table size 3745 Kbytes.




Supplementary file Size Download File type/resource
GSM176904.txt.gz 1.4 Mb (ftp)(http) TXT
Processed data included within Sample table
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