NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM177008 Query DataSets for GSM177008
Status Public on Mar 24, 2007
Title Dicer T00312750_15773_5
Sample type RNA
 
Source name Dicer mutant embryonic heart
Organism Mus musculus
Characteristics embryonic day 11.5 heart
Extracted molecule total RNA
Extraction protocol For RNA isolation, embryonic heart was dissected out and lysed using QiaShredder. RNA was isolated using RNeasy micro columns following the manufacturer's instructions, and including an on-column DNase digestion step.
Label biotin
Label protocol CodeLink Expression Assay protocol
 
Hybridization protocol CodeLink Expression Assay protocol
Scan protocol CodeLink Expression Assay protocol
Description Dicer mutant experimental group
Data processing GeneSpring analysis
 
Submission date Mar 22, 2007
Last update date Oct 30, 2008
Contact name Ankang Li
E-mail(s) [email protected]
Organization name IBT
Department CMDD
Street address 2121 West Holcombe
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL5025
Series (1)
GSE7343 Dicer conditional knockout embryonic heart mutant vs control array

Data table header descriptions
ID_REF
RAW_INTENSITY raw signal intensity
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag G=Good signal; L=Limit signal; I=Irregular shape; S=Saturated signal; M=MSR spot; C=Background contaminated; X=User excluded spots
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
UNF_VALUE Normalized signal

Data table
ID_REF RAW_INTENSITY VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1 7328.6436 110.8111 G 121.4424 7368.6436 2551 8078.0835 159 14.22832012 60.67605701 42.9813 40 13.784 111 110.8111
2 1116.4639 16.8812 G 18.3046 1156.4639 1339 607.5803 97 11.11324596 63.1787613 43.7033 40 15.4525 188 16.8812
3 25.6444 0.3878 G 1.0588 63.6444 63 26.8363 45 7.569397449 60.11185938 41.5275 38 14.7412 188 0.3878
4 186.5412 2.8206 G 3.9327 222.5412 231 78.0991 85 10.40314198 56.58668671 40.044 36 13.7245 188 2.8206
5 33.3846 0.5048 G 1.2238 72.3846 71 31.5309 52 8.136857986 59.14663952 41.0824 39 13.4311 188 0.5048
6 1.7586 L 0.6552 38.7586 35 14.6326 29 6.076507568 59.15134703 40.9615 37 14.7676 188 0.0266
7 7466.1431 112.8901 G 131.4431 7503.1431 2696 8330.8789 156 14.0934515 57.08281528 40.2167 37 13.3885 124 112.8901
8 6755.8818 102.1508 G 111.7371 6792.8818 2344 7619.3569 146 13.63425732 60.79341651 41.1404 37 15.8623 118 102.1508
9 164.2152 2.483 G 3.3663 203.2152 211 91.113 79 10.02925301 60.36741481 41.6868 39 14.2449 188 2.483
10 48.3103 0.7305 G 1.4194 86.3103 81 33.4124 58 8.59348011 60.80889138 41.6374 38 15.2059 188 0.7305
11 43.0333 0.6507 G 1.3487 80.0333 74 29.64 60 8.740387917 59.33974876 40.3077 37 14.8932 188 0.6507
12 7184.1914 108.627 G 121.7399 7221.1914 2678 8020.165 138 13.25545406 59.31653278 40.7667 37 14.8777 124 108.627
13 7201.4785 108.8883 G 119.6533 7237.4785 2908 7841.269 142 13.44618988 60.48708337 41.8917 36 16.3247 124 108.8883
14 5.3372 L 0.7445 44.3372 41 17.5231 86 10.46415806 59.55276215 42.4024 39 13.7018 170 0.0807
15 16.9118 L 0.9407 53.9118 42 38.7043 34 6.579524517 57.30763252 41.0753 37 13.5384 152 0.2557
16 12.5581 L 0.8808 51.5581 48 22.0357 86 10.46415806 58.53318408 41.9281 39 13.0221 173 0.1899
17 6.4444 L 0.7574 46.4444 42 18.0346 54 8.291859627 61.32280385 41.629 40 14.2152 64 0.0974
18 7389.6187 111.7331 G 117.0098 7432.6187 2241 8282.6006 141 13.39875984 63.52135322 45.8037 43 13.6809 111 111.7331
19 7519.7329 113.7004 G 121.1758 7559.7329 3451 7807.3667 133 13.01310349 62.38646885 43.7654 40 14.9243 168 113.7004
20 12.2121 L 0.8162 49.2121 41 22.1807 33 6.482044697 60.29160243 42.3103 37 15.5277 149 0.1847

Total number of rows: 36227

Table truncated, full table size 3726 Kbytes.




Supplementary file Size Download File type/resource
GSM177008.txt.gz 1.4 Mb (ftp)(http) TXT
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap