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| Status |
Public on Feb 15, 2008 |
| Title |
O#64 |
| Sample type |
RNA |
| |
|
| Source name |
bone marrow
|
| Organism |
Homo sapiens |
| Characteristics |
Male, 135 months of age
|
| Biomaterial provider |
COG cell bank
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen Rneasy
|
| Label |
biotin
|
| Label protocol |
Enzo BioArray HighYield RNA transcript labeling kit
|
| |
|
| Hybridization protocol |
Affymetrix:Protocol:Hybridization-EukGE-WS2v4_450
|
| Scan protocol |
M10 scanner, Pixel size 1.56, Filter 570
|
| Description |
SER: slow early responder = patient with M3 marrow at Day 7; Relapse: patients that relapsed within 3 years of initial diagnosis
|
| Data processing |
MAS 5.0
|
| |
|
| Submission date |
Apr 03, 2007 |
| Last update date |
Nov 14, 2018 |
| Contact name |
Deepa Bhojwani |
| E-mail(s) |
[email protected]
|
| Organization name |
New York University School of Medicine
|
| Department |
Pediatric Hematology Oncology
|
| Street address |
Smilow Research Building 1206-B, 522 First Avenue
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10016 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE7440 |
Early Response and Outcome in High-Risk Childhood Acute Lymphoblastic Leukemia: A Children’s Oncology Group Study |
|
| Relations |
| Reanalyzed by |
GSE64985 |
| Reanalyzed by |
GSE119087 |
| Reanalyzed by |
GSE122511 |
| Data table header descriptions |
| ID_REF |
|
| VALUE |
Signal |
| ABS_CALL |
indicating whether the transcript was present (P), absent (A), or marginal (M) |
| DETECTION P-VALUE |
|
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
196.067 |
P |
7.00668e-05 |
| AFFX-BioB-M_at |
315.768 |
P |
4.42873e-05 |
| AFFX-BioB-3_at |
216.446 |
P |
4.42873e-05 |
| AFFX-BioC-5_at |
750.788 |
P |
4.42873e-05 |
| AFFX-BioC-3_at |
855.556 |
P |
4.42873e-05 |
| AFFX-BioDn-5_at |
1453.58 |
P |
4.42873e-05 |
| AFFX-BioDn-3_at |
2626.61 |
P |
4.42873e-05 |
| AFFX-CreX-5_at |
8231.65 |
P |
5.16732e-05 |
| AFFX-CreX-3_at |
8705.54 |
P |
4.42873e-05 |
| AFFX-DapX-5_at |
2.58615 |
A |
0.58862 |
| AFFX-DapX-M_at |
7.6729 |
A |
0.275146 |
| AFFX-DapX-3_at |
0.945763 |
A |
0.981719 |
| AFFX-LysX-5_at |
2.73605 |
A |
0.699394 |
| AFFX-LysX-M_at |
5.2681 |
A |
0.574038 |
| AFFX-LysX-3_at |
9.48307 |
A |
0.175328 |
| AFFX-PheX-5_at |
1.74452 |
A |
0.824672 |
| AFFX-PheX-M_at |
2.56425 |
A |
0.699394 |
| AFFX-PheX-3_at |
3.05967 |
A |
0.712257 |
| AFFX-ThrX-5_at |
4.12379 |
A |
0.52976 |
| AFFX-ThrX-M_at |
10.7777 |
A |
0.139482 |
Total number of rows: 54675
Table truncated, full table size 1614 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM180197.CEL.gz |
8.0 Mb |
(ftp)(http) |
CEL |
| GSM180197.CHP.gz |
12.8 Mb |
(ftp)(http) |
CHP |
| GSM180197.EXP.gz |
365 b |
(ftp)(http) |
EXP |
| Processed data provided as supplementary file |
| Processed data included within Sample table |
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