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Status
Public on Dec 31, 2007
Title
whole saliva control 2
Sample type
RNA
Source name
whole saliva freezed -80 right after colloection
Organism
Homo sapiens Characteristics
gender: female','age: 36','tissue: whole saliva','healthy control
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from whole saliva according to the manufacturer's instruction (QIAamp Viral RNA kit, Qiagene, Valencia, CA USA). Isolated RNA was subjected to two round linear amplification using RiboAmp HS RNA Amplification kit (ARCTURUS, Mountain view, CA USA).
Label
biotinylate
Label protocol
Amplified RNA was labeled at second round of IVT using Gene Chip Expression 3'-Amplification Reagents for IVT labeling according to manusfacturer's instruction (Affymetrix, Santa Clara, CA USA).
Hybridization protocol
Affymetrix standard protocol
Scan protocol
Affymetrix standard protocol
Description
whole saliva','healthy control'
Data processing
MAS5.0
Submission date
Apr 03, 2007
Last update date
Aug 28, 2018
Contact name
david wong
E-mail(s)
[email protected] Organization name
UCLA
Street address
10833 Le Conte ave.
City
Los Angeles
State/province
CA
ZIP/Postal code
90095
Country
USA
Platform ID
GPL570 Series (1)
GSE7451 Primary Sjogren's syndrome and control whole saliva
Relations Reanalyzed by
GSE64985 Reanalyzed by
GSE119087
Data table header descriptions ID_REF VALUE intensity
ABS_CALL presence /absence
DETECTION P-VALUE background correction
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
276602
P
4.42873e-05
AFFX-BioB-M_at
568617
P
4.42873e-05
AFFX-BioB-3_at
513096
P
4.42873e-05
AFFX-BioC-5_at
896735
P
4.42873e-05
AFFX-BioC-3_at
541390
P
4.42873e-05
AFFX-BioDn-5_at
1.45319e+06
P
4.42873e-05
AFFX-BioDn-3_at
2.41613e+06
P
4.42873e-05
AFFX-CreX-5_at
6.60569e+06
P
4.42873e-05
AFFX-CreX-3_at
5.98599e+06
P
4.42873e-05
AFFX-DapX-5_at
1340.75
A
0.794268
AFFX-DapX-M_at
424.974
A
0.973889
AFFX-DapX-3_at
397.229
A
0.976071
AFFX-LysX-5_at
2591.63
A
0.699394
AFFX-LysX-M_at
627.206
A
0.976071
AFFX-LysX-3_at
3242.13
A
0.737246
AFFX-PheX-5_at
1144.95
A
0.941556
AFFX-PheX-M_at
304.499
A
0.937071
AFFX-PheX-3_at
1039.69
A
0.941556
AFFX-ThrX-5_at
2493.76
A
0.712257
AFFX-ThrX-M_at
442.021
A
0.957038
54675 1574 Kbytes .Supplementary file Size Download File type/resource GSM180373.CEL.gz
3.5 Mb
(ftp) (http) CEL
GSM180373.CHP.gz
299.1 Kb
(ftp) (http) CHP
Processed data included within Sample table Processed data provided as supplementary file
