NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1809359 Query DataSets for GSM1809359
Status Public on Jul 20, 2015
Title 11-7-2013, Mouse #22 SAMPLE 421
Sample type RNA
 
Source name PDX mouse
Organism Homo sapiens
Characteristics model: Model HCI-002
cell type: Lymph node metastatic cell
Treatment protocol n/a
Growth protocol Patient-derived xenograft model
Extracted molecule total RNA
Extraction protocol Enzymatic tissue digest
Label SYBR Green
Label protocol Single-cell gene expression using SsoFast EvaGreen SuperMix with low Rox on the BioMark system, advanced protocol 41
 
Hybridization protocol n/a
Scan protocol n/a
Description Lymph node metastatic cell
Data processing Data analyzed using Fluidigm real-time PCR analysis software and custom algorithms in R statistical software
 
Submission date Jul 06, 2015
Last update date Jul 20, 2015
Contact name Devon Lawson
E-mail(s) [email protected]
Organization name UCSF
Department Anatomy
Lab Zena Werb
Street address 513 Parnassus Ave Hsw 1301
City San Francisco
State/province California
ZIP/Postal code 94143
Country USA
 
Platform ID GPL20665
Series (2)
GSE70552 Single-cell analysis reveals a stem cell program in human metastatic breast cancer cells (PDX mice - cancer cells)
GSE70555 Single-cell analysis reveals a stem cell program in human metastatic breast cancer cells

Data table header descriptions
ID_REF
VALUE normalized signal

Data table
ID_REF VALUE
ACTA2
AKT1
AR
ASPSCR1
BCL2 1.739788136
BCL2L1 -6.645577249
BMI1 1.762281317
BRCA1 0.862112527
BRCA2
CASP3
CAV1
CAV2 1.38297919
CCNB1 0.674843061
CCND1
CCNE1 6.448864244
MME 1.257215924
CD24 0.349092023
CD44 2.593348435
THY1
CDH1 1.110097084

Total number of rows: 116

Table truncated, full table size 1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap