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GEO accession:
Sample GSM1810219
Query DataSets for GSM1810219
Status
Public on Jul 20, 2015
Title
12-9-2013, Individual #3 SAMPLE 257
Sample type
RNA
Source name
Reduction mammoplasty
Organism
Homo sapiens
Characteristics
disease state: Luminal progenitor
Treatment protocol
n/a
Growth protocol
n/a
Extracted molecule
total RNA
Extraction protocol
Enzymatic tissue digest
Label
SYBR Green
Label protocol
Single-cell gene expression using SsoFast EvaGreen SuperMix with low Rox on the BioMark system, advanced protocol 41
Hybridization protocol
n/a
Scan protocol
n/a
Description
Luminal progenitor
Data processing
Data analyzed using Fluidigm real-time PCR analysis software and custom algorithms in R statistical software
Submission date
Jul 06, 2015
Last update date
Jul 20, 2015
Contact name
Devon Lawson
E-mail(s)
[email protected]
Organization name
UCSF
Department
Anatomy
Lab
Zena Werb
Street address
513 Parnassus Ave Hsw 1301
City
San Francisco
State/province
California
ZIP/Postal code
94143
Country
USA
Platform ID
GPL20665
Series (2)
GSE70554
Single-cell analysis reveals a stem cell program in human metastatic breast cancer cells (Human patients - mammary cells)
GSE70555
Single-cell analysis reveals a stem cell program in human metastatic breast cancer cells
Data table header descriptions
ID_REF
VALUE
normalized signal
Data table
ID_REF
VALUE
ACTA2
2.163659662
AKT1
AR
BCL2
0.475308307
BCL2L1
-3.307218494
BMI1
1.645305344
BRCA1
CASP3
CAV1
1.391092967
CAV2
0.7813337
CCNB1
-8.087607134
CCND1
CCNE1
-2.222257631
MME
1.827249523
CD24
-2.088545633
CD44
-0.44541426
THY1
2.694849334
CDH1
CDH3
0.345670046
CDK1
-2.102240654
Total number of rows:
111
Table truncated, full table size
1 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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