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GEO accession:
Sample GSM1810222
Query DataSets for GSM1810222
Status
Public on Jul 20, 2015
Title
12-9-2013, Individual #3 SAMPLE 260
Sample type
RNA
Source name
Reduction mammoplasty
Organism
Homo sapiens
Characteristics
disease state: Luminal progenitor
Treatment protocol
n/a
Growth protocol
n/a
Extracted molecule
total RNA
Extraction protocol
Enzymatic tissue digest
Label
SYBR Green
Label protocol
Single-cell gene expression using SsoFast EvaGreen SuperMix with low Rox on the BioMark system, advanced protocol 41
Hybridization protocol
n/a
Scan protocol
n/a
Description
Luminal progenitor
Data processing
Data analyzed using Fluidigm real-time PCR analysis software and custom algorithms in R statistical software
Submission date
Jul 06, 2015
Last update date
Jul 20, 2015
Contact name
Devon Lawson
E-mail(s)
[email protected]
Organization name
UCSF
Department
Anatomy
Lab
Zena Werb
Street address
513 Parnassus Ave Hsw 1301
City
San Francisco
State/province
California
ZIP/Postal code
94143
Country
USA
Platform ID
GPL20665
Series (2)
GSE70554
Single-cell analysis reveals a stem cell program in human metastatic breast cancer cells (Human patients - mammary cells)
GSE70555
Single-cell analysis reveals a stem cell program in human metastatic breast cancer cells
Data table header descriptions
ID_REF
VALUE
normalized signal
Data table
ID_REF
VALUE
ACTA2
1.480082691
AKT1
AR
-2.830193965
BCL2
0.425751153
BCL2L1
4.71525699
BMI1
1.497776396
BRCA1
CASP3
CAV1
-0.008388556
CAV2
-2.182047843
CCNB1
4.392305539
CCND1
CCNE1
-1.914548976
MME
-1.404275577
CD24
-1.148056463
CD44
0.570641162
THY1
CDH1
1.291346859
CDH3
0.099822315
CDK1
0.59486894
Total number of rows:
111
Table truncated, full table size
1 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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