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Sample GSM18329 Query DataSets for GSM18329
Status Public on Mar 09, 2004
Title 0.1uM_IAA_3h_1.1 AG
Sample type RNA
 
Source name whole plant, WT Col-0
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
Description Exposure to 0.1micromolar IAA for 3h prior to harvest, hybridization 1; scaling factor 5.0. Same sample hybridized also to ATH1 probe array (refer to series GSE1110 and data GSM18294 and 18295). See series file for additional information.
Keywords = IAA
Keywords = whole plant
Keywords = indole-3-acetic acid
 
Submission date Mar 05, 2004
Last update date May 27, 2005
Contact name Julia C Redman
E-mail(s) [email protected]
Phone 301-795-7000
URL http://www.tigr.org
Organization name The Institute for Genomic Research
Department Plant Genomics
Lab Christopher Town
Street address 9712 Medical Center Dr
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL71
Series (1)
GSE1111 Comparison of AG and ATH1 using IAA

Data table header descriptions
ID_REF
VALUE Intensity for each probe set identifier as calculated by Affymetrix Microarray Suite 5.0. Adjusted to average target signal of 500.
ABS_CALL Qualitative measurement indicating whether the probe set is detected (Present; P), not detected (Absent; A), or marginally detected (Marginal; M), based on p-value calculated for perfect match vs mismatch probe sets
detection_p-value Measures the probability that the discrimination scores of all probe pairs in the probe set are above a certain level, indicating hybridization to the target is specific and present.

Data table
ID_REF VALUE ABS_CALL detection_p-value
AFFX-MurIL2_at 10.9 A 0.973889
AFFX-MurIL10_at 13.8 A 0.824672
AFFX-MurIL4_at 7.6 A 0.843268
AFFX-MurFAS_at 11.2 A 0.686277
AFFX-BioB-5_at 369.3 P 0.006187
AFFX-BioB-M_at 554.2 P 0.000147
AFFX-BioB-3_at 360.6 P 0.000195
AFFX-BioC-5_at 1275.7 P 0.000127
AFFX-BioC-3_at 898.4 P 0.000044
AFFX-BioDn-5_at 1229.2 P 0.000044
AFFX-BioDn-3_at 5159.4 P 0.000044
AFFX-CreX-5_at 14004.3 P 0.000044
AFFX-CreX-3_at 16922.9 P 0.000044
AFFX-BioB-5_st 23.4 A 0.5
AFFX-BioB-M_st 18.9 A 0.783476
AFFX-BioB-3_st 23.5 A 0.860518
AFFX-BioC-5_st 6.6 A 0.987453
AFFX-BioC-3_st 5.7 A 0.904333
AFFX-BioDn-5_st 47.4 A 0.41138
AFFX-BioDn-3_st 127.1 M 0.042962

Total number of rows: 8297

Table truncated, full table size 209 Kbytes.




Supplementary data files not provided

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