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Sample GSM183479 Query DataSets for GSM183479
Status Public on Jul 30, 2007
Title mock-2
Sample type RNA
 
Source name leaf, mock-treated, 24 h
Organism Oryza sativa
Characteristics cultivar: Nipponbare,
stage: 4-leave
sample: 4th leaf
mock-treated
Extracted molecule total RNA
Extraction protocol RNeasy Plant Mini Kit (Qiagen)
Label Cy3
Label protocol Low RNA inout Lineat Amplification/Labeling Lit (Agilent)

 
Hybridization protocol Agilent protocol G4140-90040
Scan protocol Agilent scanner model G2505B, software G2565BA
Description 400 ng RNAs were labeled and 1µg Cy3-labeled cRNAs were used.
Data processing Data was analyzed by Fearure Extraction software (version 9.1, Agilent) and normalized by GeneSpringX
 
Submission date Apr 21, 2007
Last update date Apr 26, 2007
Contact name Hiroshi Takatsuji
E-mail(s) [email protected]
Organization name National Institute of Agrobiological Sciences
Department Division of Plant Sciences
Lab Plant Disease Resistance Research Unit
Street address 2-1-2 Kannondai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8602
Country Japan
 
Platform ID GPL5101
Series (1)
GSE7567 BTH-responsive rice genes

Data table header descriptions
ID_REF
VALUE normalized signal
RAW raw signal
p-value p-value

Data table
ID_REF VALUE RAW p-value
AB000801 0.722 886.7 0.19
AB001882 1.105 13245 0.501
AB001883 0.97 12029 0.812
AB001884 1.625 123.6 0.131
AB001885 1.501 16425 0.153
AB001886 0.819 3103 0.296
AB001887 1.065 262 0.643
AB001888 0.786 12162 0.25
AB002266 0.962 37.69 0.812
AB002820 0.911 95354 0.521
AB003194 0.512 163.8 0.0955
AB003195 1.062 105.3 0.662
AB003322 0.87 4422 0.397
AB003323 0.978 205.5 0.864
AB003324 0.858 2.641 0.884
AB003325 1.273 8.216 0.559
AB003326 0.669 10316 0.155
AB003327 1.021 7148 0.868
AB003328 0.877 4871 0.413
AB003496 0.998 125.7 0.988

Total number of rows: 30918

Table truncated, full table size 810 Kbytes.




Supplementary file Size Download File type/resource
GSM183479.TXT.gz 7.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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