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Sample GSM183481 Query DataSets for GSM183481
Status Public on Jul 30, 2007
Title mock-4
Sample type RNA
 
Source name leaf, mock-treated, 24 h
Organism Oryza sativa
Characteristics cultivar: Nipponbare,
stage: 4-leave
sample: 4th leaf
mock-treated
Extracted molecule total RNA
Extraction protocol RNeasy Plant Mini Kit (Qiagen)
Label Cy3
Label protocol Low RNA inout Lineat Amplification/Labeling Lit (Agilent)

 
Hybridization protocol Agilent protocol G4140-90040
Scan protocol Agilent scanner model G2505B, software G2565BA
Description 400 ng RNAs were labeled and 1µg Cy3-labeled cRNAs were used.
Data processing Data was analyzed by Fearure Extraction software (version 9.1, Agilent) and normalized by GeneSpringX
 
Submission date Apr 21, 2007
Last update date Apr 26, 2007
Contact name Hiroshi Takatsuji
E-mail(s) [email protected]
Organization name National Institute of Agrobiological Sciences
Department Division of Plant Sciences
Lab Plant Disease Resistance Research Unit
Street address 2-1-2 Kannondai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8602
Country Japan
 
Platform ID GPL5101
Series (1)
GSE7567 BTH-responsive rice genes

Data table header descriptions
ID_REF
VALUE normalized signal
RAW raw signal
p-value p-value

Data table
ID_REF VALUE RAW p-value
AB000801 3.002 3084 0.0576
AB001882 0.895 8988 0.468
AB001883 0.997 10353 0.984
AB001884 0.375 23.87 0.084
AB001885 0.499 4566 0.0906
AB001886 1.228 3892 0.288
AB001887 0.779 160.4 0.243
AB001888 1.118 14480 0.465
AB002266 1.146 37.6 0.443
AB002820 1.182 103580 0.343
AB003194 1.239 332.1 0.278
AB003195 0.938 77.89 0.646
AB003322 1.075 4573 0.599
AB003323 1.227 215.7 0.289
AB003324 0.91 2.343 0.928
AB003325 1.019 5.504 0.964
AB003326 1.166 15056 0.366
AB003327 0.146 854.5 0.033
AB003328 1.123 5223 0.452
AB003496 1.044 110.1 0.744

Total number of rows: 30918

Table truncated, full table size 812 Kbytes.




Supplementary file Size Download File type/resource
GSM183481.TXT.gz 7.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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