|
| Status |
Public on Sep 16, 2015 |
| Title |
STKHLM7106_tumor |
| Sample type |
genomic |
| |
|
| Source name |
tumor robotic radical prostatectomy tissue
|
| Organism |
Homo sapiens |
| Characteristics |
patient: STKHLM7106
sample type: tumor
tissue: tissue core
tumor gleason: 7=3+4
tumor %: 70%
(derived data) iclusterplus group: 1
extra-capsular extension (ece): N
positive surgical margins (psm): Y
biochemical relapse (bcr): Y
time to bcr (months): 43
tmprss2/erg gene fusion status: unknown
|
| Treatment protocol |
tumor tissues were identified and prepared from RP surgical tissue as described in Warren et al. (2013). The Prostate. 73: 194-202. Matched whole blood samples were obtained from selected samples at treatment clinics.
|
| Growth protocol |
N/A - surgical tissue or whole blood samples
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Qiagen AllPrep, according to manufacturer's instructions
|
| Label |
biotin
|
| Label protocol |
Standard Affymetrix SNP6 label protocol
|
| |
|
| Hybridization protocol |
Standard Affymetrix SNP6 hyb protocol
|
| Scan protocol |
Standard Affymetrix SNP6 scan protocol
|
| Description |
tumor robotic radical prostatectomy tissue from patient STKHLM7106
|
| Data processing |
SNP6 data were analyzed in ASCAT (van Loo et al., 2010). Processed data file (reporting Log R Ratio and B Allele Freq) is linked as a supplementary file on the Series record.
SNP6 genotype array data for matched tumor and benign or matched tumor and blood samples.
|
| |
|
| Submission date |
Sep 16, 2015 |
| Last update date |
Sep 16, 2015 |
| Contact name |
Chandra Chilamakuri |
| E-mail(s) |
[email protected]
|
| Organization name |
Cancer Research UK Cambridge Institute
|
| Street address |
Robinson Way
|
| City |
Cambridge |
| ZIP/Postal code |
CB2 0RE |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL6801 |
| Series (2) |
| GSE70770 |
Prostate cancer stratification using molecular profiles |
| GSE73076 |
Prostate cancer stratification using molecular profiles [Stockholm genotype] |
|
