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Status
Public on Dec 11, 2007
Title
Normal Cervix NC__N4
Sample type
RNA
Source name
normal squamous cervical epitheilium
Organism
Homo sapiens Characteristics
normal
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from 1000-5000 laser capture microdissected cells using the Arcturus PicoPure RNA isolation Kit (KIT0202).
Label
biotin
Label protocol
20-100 ng of total RNA was processed to produce biotinylated cRNA targets, using two rounds of T7-base RNA amplification with the Arcturus RiboAmp kit (KIT0201).
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Normal Cervix NC__N4
Data processing
Ann Arbor quantile-normalized trimmed-mean method
Submission date
May 15, 2007
Last update date
Feb 26, 2020
Contact name
Rork Kuick
E-mail(s)
[email protected] Phone
734-936-9241
Organization name
University of Michigan
Street address
University of Michigan, SPH II, 1415 Washington Heights, Room M2533
City
Ann Arbor
State/province
MI
ZIP/Postal code
48109-2029
Country
USA
Platform ID
GPL96 Series (1)
GSE7803 Human pre-invasive and invasive cervical squamous cell carcinomas and normal cervical epithelia
Relations Reanalyzed by
GSE145976
Data table header descriptions ID_REF VALUE quantile-normalized trimmed-mean, log-transformed with log(max(x+50,0)+50) using base 2 logarithms
Data table ID_REF VALUE 206858_s_at
7.768184325
204416_x_at
6.539158811
206632_s_at
9.603626345
212949_at
5.64385619
207039_at
9.390168956
213008_at
5.64385619
202620_s_at
10.13185696
204947_at
7.539158811
219787_s_at
8.573647187
210093_s_at
7.857980995
204126_s_at
7.87036472
201663_s_at
9.038918989
218959_at
8.499845887
202338_at
9.226412193
218009_s_at
9.06608919
202580_x_at
9.876516947
206316_s_at
8.675957033
209935_at
7.794415866
212058_at
10.88722062
209900_s_at
8.011227255
22283 494 Kbytes .Supplementary file Size Download File type/resource GSM189392.CEL.gz
3.3 Mb
(ftp) (http) CEL
Processed data included within Sample table
