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Status
Public on Mar 28, 2004
Title
Mouse Liver Female 2
Sample type
RNA
Source name
Mouse Liver
Organism
Mus musculus
Extracted molecule
total RNA
Description
Triple selected polyA RNA for liver, kidney, ovary, testis, was obtained from Ambion (Austin, TX). Total RNA was obtained form Ambion for hypothalamus samples. All RNA samples had an agilent ratio greater than 1 indicating that degradation had not occurred. All RNA samples were prepared from a pool of 10 different animals. The total RNA samples were labeled for hybridization onto the microarray according to affymetrix protocols listed at:http://keck.med.yale.edu/affymetrix/protocols Keywords = Sex Specific Transcription, Mouse, Affymetrix, Healthy Mammalian Tissue
Submission date
Mar 26, 2004
Last update date
May 27, 2005
Contact name
Joel Rozowsky
E-mail(s)
[email protected]
Phone
203-432-5405
Organization name
Yale University
Department
Molecular Biophysics & Biochemistry
Lab
Gerstein Lab
Street address
266 Whitney Ave, Bass 437
City
New Haven
State/province
CT
ZIP/Postal code
06520
Country
USA
Platform ID
GPL339
Series (1)
GSE1148
Sex Specific Transciption in Mouse Tissues
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
179.9
P
0.008440
AFFX-BioB-M_at
368.7
P
0.000754
AFFX-BioB-3_at
263.7
P
0.001102
AFFX-BioC-5_at
727.6
P
0.000095
AFFX-BioC-3_at
443.6
P
0.000044
AFFX-BioDn-5_at
663.4
P
0.000095
AFFX-BioDn-3_at
3306.8
P
0.000110
AFFX-CreX-5_at
5432.3
P
0.000044
AFFX-CreX-3_at
11599.5
P
0.000044
AFFX-DapX-5_at
20.9
A
0.239063
AFFX-DapX-M_at
35.9
A
0.102165
AFFX-DapX-3_at
25.0
A
0.631562
AFFX-LysX-5_at
16.7
A
0.262827
AFFX-LysX-M_at
34.8
A
0.544587
AFFX-LysX-3_at
21.1
A
0.175328
AFFX-PheX-5_at
2.6
A
0.945787
AFFX-PheX-M_at
2.1
A
0.932322
AFFX-PheX-3_at
81.8
A
0.287743
AFFX-ThrX-5_at
7.3
A
0.843268
AFFX-ThrX-M_at
35.2
A
0.175328
Total number of rows: 22690 Table truncated, full table size 628 Kbytes .Supplementary data files not provided