|
| Status |
Public on Dec 22, 2015 |
| Title |
genomic DNA from PM227 abnormal MSS placental chorionic villi |
| Sample type |
genomic |
| |
|
| Source name |
PM227
|
| Organism |
Homo sapiens |
| Characteristics |
status/group: Ab. MSS
fetal sex/sex: M
sample tissue: placental chorionic villi
fetal gestational age (weeks)/trimester: 39
age (years): 38.2
450k plate id: WG0011624-MSA4
450k sentrix_id: 9285451059
450k sentrix_position: R02C01
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted by standard salt method and purified using Qiagen DNeasy Kit according to standard instructions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader (HiScan) using standard recommended Illumina scanner setting
|
| Data processing |
GenomeStudio software v2011.1
|
| |
|
| Submission date |
Nov 05, 2015 |
| Last update date |
Mar 25, 2019 |
| Contact name |
Wendy Robinson |
| E-mail(s) |
[email protected]
|
| Organization name |
University of British Columbia
|
| Department |
Medical Genetics
|
| Lab |
Robinosn
|
| Street address |
950 W 28th Ave
|
| City |
Vancouver |
| State/province |
BC |
| ZIP/Postal code |
V5Z 4H4 |
| Country |
Canada |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE74738 |
Pervasive polymorphic imprinted methylation in the human placenta |
|
| Relations |
| Reanalyzed by |
GSM2905471 |
| Reanalyzed by |
GSE128827 |
