|
| Status |
Public on May 26, 2016 |
| Title |
CRC organoid 3 |
| Sample type |
RNA |
| |
|
| Source name |
Patient 15
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Large intestine
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted using Rneasy Plus Mini Kit according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
standard Affymetrix procedures
|
| |
|
| Hybridization protocol |
standard Affymetrix procedures
|
| Scan protocol |
GeneChips were scanned using GeneChip Scanner 3000 7G
|
| Description |
Batch 2
|
| Data processing |
The data was analyzed with RMA for normalization. A batch effect was compensated by ComBat algorithm. The pre-processed data was median-centered.
|
| |
|
| Submission date |
Nov 09, 2015 |
| Last update date |
May 26, 2016 |
| Contact name |
Mariko Shimokawa |
| Organization name |
Keio University
|
| Street address |
35, Shinanomachi, Shinjuku-Ku
|
| City |
Tokyo |
| ZIP/Postal code |
160-8582 |
| Country |
Japan |
| |
|
| Platform ID |
GPL16043 |
| Series (1) |
| GSE74843 |
Expression data of cultured organoids derived from human colorectal tumors and normal samples. |
|
