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Sample GSM200619 Query DataSets for GSM200619
Status Public on Jun 22, 2007
Title 10-4, photosynthetic, 10 W/m2
Sample type RNA
 
Source name photosynthetic conditions (10W/m2 white light illumination, no oxygen); no salt stress
Organism Cereibacter sphaeroides 2.4.1
Characteristics strain: 2.4.1
Growth protocol Cells are grown at anoxic photosynthetic (10 W/m2 illumination) conditions without salt stress
Extracted molecule total RNA
Extraction protocol RNA isolated with bead beater + RNeasy kits
Label biotin
Label protocol according Affymetrix protocol
 
Hybridization protocol according Affymetrix protocol
Scan protocol according Affymetrix protocol
Description Rhodobacter sphaeroides 2.4.1, Laramie
Data processing RMA (context-dependent) processing for corresponding experimental series was used for data analysis and mentioned in the papers; MAS 5.0 values are depositied here for consistensy with other submissions
 
Submission date Jun 11, 2007
Last update date Aug 14, 2011
Contact name Mark Gomelsky
E-mail(s) [email protected]
Phone 307-766-3522
Organization name University of Wyoming
Department Molecular Biology
Lab Gomelsky
Street address
City Laramie
State/province WY
ZIP/Postal code 82071
Country USA
 
Platform ID GPL162
Series (1)
GSE8082 Rhodobacter sphaeroides salt stress response

Data table header descriptions
ID_REF
MAS5.0_VALUE relative signal of expression, MAS 5.0 in-chip scaling to 500
DETECTION CALL Present if p<0.04 Absent if p>0.06 Marginal if 0.04 < p < 0.06
VALUE RMA values of expression calculated in context of GSE8082 series

Data table
ID_REF MAS5.0_VALUE DETECTION CALL VALUE
1 25.9 A 37
2 5 A 32
3 2 A 22
4 4.1 A 20
5 2.3 A 21
6 1.2 A 20
7 1.8 A 22
8 23.1 A 22
9 3.7 A 23
10 2.4 A 21
11 7.2 A 20
12 1.2 A 20
13 0.2 A 19
14 0.4 A 19
15 0.4 A 19
16 0.1 A 19
17 6.3 A 20
18 4.7 A 22
19 0.9 A 19
20 0.2 A 19

Total number of rows: 5355

Table truncated, full table size 83 Kbytes.




Supplementary file Size Download File type/resource
GSM200619.CEL.gz 1.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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