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Sample GSM206430 Query DataSets for GSM206430
Status Public on Feb 19, 2009
Title mRNA quantitation of DCM heart-14
Sample type RNA
 
Source name CHF ID14
Organism Homo sapiens
Characteristics LV myocytes isolated from CHF patient ID14
Extracted molecule total RNA
Extraction protocol Total RNA was extracted by RNeasy mini spin column (Qiagen, Inc).
Label biotin
Label protocol Biotinylated cDNA were prepared according to the Ovation Biotin RNA Amplification and Labeling System, NuGEN Technologies, Inc.
 
Hybridization protocol 2 ug of cDNA were hybridized for 18 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G.
Description LV myocytes of a CHF patient was hybridized.
Data processing The mean value for the internal control probe sets (defined by Affymetrix) was set to be 500.
 
Submission date Jun 29, 2007
Last update date Aug 28, 2018
Contact name Hiroyuki Mano
E-mail(s) [email protected]
Phone +81-285-58-7449
Fax +81-285-44-7322
Organization name Jichi Medical University
Department Division of Functional Genomics
Street address 3311-1 Yakushiji
City Shimotsukeshi
State/province Tochigi
ZIP/Postal code 329-0498
Country Japan
 
Platform ID GPL570
Series (1)
GSE8331 mRNA quantitation of human heart left ventricles
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Expression intensity
ABS_CALL Absent call
DETECTION P-VALUE Reliability of expression intensity defined by Affymetrix

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 258.953 P 4.42873e-05
AFFX-BioB-M_at 548.51 P 4.42873e-05
AFFX-BioB-3_at 469.31 P 4.42873e-05
AFFX-BioC-5_at 675.398 P 4.42873e-05
AFFX-BioC-3_at 371.671 P 4.42873e-05
AFFX-BioDn-5_at 1152.63 P 4.42873e-05
AFFX-BioDn-3_at 2606.09 P 4.42873e-05
AFFX-CreX-5_at 4819.83 P 5.16732e-05
AFFX-CreX-3_at 4742.1 P 4.42873e-05
AFFX-DapX-5_at 2.65729 A 0.116113
AFFX-DapX-M_at 0.442528 A 0.966323
AFFX-DapX-3_at 3.01668 A 0.18511
AFFX-LysX-5_at 1.42042 A 0.470241
AFFX-LysX-M_at 2.70949 A 0.102145
AFFX-LysX-3_at 1.15539 A 0.368438
AFFX-PheX-5_at 0.553745 A 0.737173
AFFX-PheX-M_at 2.24453 A 0.396911
AFFX-PheX-3_at 2.09863 A 0.354453
AFFX-ThrX-5_at 1.84491 A 0.544587
AFFX-ThrX-M_at 3.45544 A 0.0894591

Total number of rows: 54675

Table truncated, full table size 1660 Kbytes.




Supplementary file Size Download File type/resource
GSM206430.CEL.gz 4.3 Mb (ftp)(http) CEL
GSM206430.CHP.gz 304.8 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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