|
| Status |
Public on Aug 11, 2017 |
| Title |
transgenic 1 |
| Sample type |
SRA |
| |
|
| Source name |
TG, subcutaneous inguinal white fat
|
| Organism |
Mus musculus |
| Characteristics |
gender: male
age: 12 weeks old
genotype/variation: Hlx transgenic
tissue: subcutaneous inguinal white fat
|
| Treatment protocol |
N/A
|
| Growth protocol |
12-week--old male mice
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted using Trizol.
Illumina TruSeq RNA sample Preparation V2 guide
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
Images were analyzed using OLB 1.9 and CASAVA_v1.8.2
TopHat v2.0.9 (bowtie2/2.1.0) was used to map the sequences to mouse genome mm10
mapped reads were processed by cufflinks (v2.2.1)
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text file including FPKM for each gene output from cummeRbund
|
| |
|
| Submission date |
Feb 22, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Yongxu Wang |
| E-mail(s) |
[email protected]
|
| Phone |
5088565647
|
| Organization name |
UMass Medical School
|
| Department |
Program in Gene Function and Expression
|
| Lab |
Yong-Xu Lab
|
| Street address |
364 Plantation Street
|
| City |
Worcester |
| State/province |
MA |
| ZIP/Postal code |
01605 |
| Country |
USA |
| |
|
| Platform ID |
GPL13112 |
| Series (1) |
| GSE78143 |
RNA-Seq of subcutaneous inguinal white fat of Hlx transgenic mice and littermate controls. |
|
| Relations |
| BioSample |
SAMN04505942 |
| SRA |
SRX1595772 |
