|
| Status |
Public on Mar 08, 2016 |
| Title |
primary breast tumor_209 |
| Sample type |
RNA |
| |
|
| Source name |
Primary breast tumor_BMI 25-29.99
|
| Organism |
Homo sapiens |
| Characteristics |
patient ethnicity: African American
bmi: 25-29.99
tumor grade: Poorly differentiated (grade 3)
tumor subtype (via breastprs): HER2 enriched
tumor stage: Stage I
|
| Extracted molecule |
total RNA |
| Extraction protocol |
isolated using RNAqueous-Micro after laser microdissection
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared after two rounds of amplification (Field et al. 2011)
|
| |
|
| Hybridization protocol |
Hybridization to U133A 2.0 arrays following manufacturer's instructions
|
| Scan protocol |
Scanning as instructed using Affymetrix protocols
|
| Description |
209.CEL.pimg
|
| Data processing |
Data were processed using Partek Genomics Suite 6.6
|
| |
|
| Submission date |
Mar 07, 2016 |
| Last update date |
Mar 08, 2016 |
| Contact name |
Rachel Ellsworth |
| E-mail(s) |
[email protected]
|
| Organization name |
Windber Research Institute
|
| Department |
Clinical Breast Care Project
|
| Street address |
620 Seventh Street
|
| City |
Windber |
| State/province |
PA |
| ZIP/Postal code |
15963 |
| Country |
USA |
| |
|
| Platform ID |
GPL571 |
| Series (1) |
| GSE78958 |
Effect of obesity on molecular characteristics of invasive breast tumors: gene expression analysis of 405 tumors by BMI |
|
