NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM212613 Query DataSets for GSM212613
Status Public on Oct 23, 2007
Title classIIhiMECs B6aireWT rep3
Sample type RNA
 
Source name MHC class II high thymic medullary epithelial cells, B6aireWT
Organism Mus musculus
Characteristics Gender: male Age: 3-4.5 weeks Isolation: FACS of CD45-G8.8+Ly51intclassIIhi TECs
Extracted molecule total RNA
Extraction protocol RNA isolated with Trizol reagent and amplified twice with the MessageAmp aRNA Kit (Ambion)
Label Biotin
Label protocol BioArray High Yield RNA Transcript Labeling T7 Kit (Enzo Life Sciences)
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description MHC class II high thymic medullary epithelial cells, B6aireWT jos3483
Data processing RMA
 
Submission date Jul 23, 2007
Last update date Aug 28, 2018
Contact name CBDM Lab
E-mail(s) [email protected]
Phone 617-432-7747
Organization name Harvard Medical School
Department Microbiology and Immunobiology
Lab CBDM
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platform ID GPL1261
Series (2)
GSE8563 Lymphtoxin pathway effects on thymic medullary epithelial cells
GSE8564 Analysis of Aire effects on individual mice of different genetic backgrounds
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1415670_at 388.152832821179
1415671_at 1301.67485834001
1415672_at 2243.46906731284
1415673_at 260.071895116467
1415674_a_at 879.189539428354
1415675_at 440.379600169765
1415676_a_at 1843.75687567987
1415677_at 494.308567915769
1415678_at 1143.10577889236
1415679_at 4283.99242164185
1415680_at 243.479951887795
1415681_at 305.596038823193
1415682_at 175.216157298745
1415683_at 2698.22464652004
1415684_at 228.384273147122
1415685_at 398.706371756588
1415686_at 1751.63381303751
1415687_a_at 4904.73000487571
1415688_at 1310.90937938703
1415689_s_at 485.109914333768

Total number of rows: 45101

Table truncated, full table size 1245 Kbytes.




Supplementary file Size Download File type/resource
GSM212613.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap