NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM213095 Query DataSets for GSM213095
Status Public on Jul 26, 2007
Title umbilical cord_bpd: 5C
Sample type RNA
 
Source name umbilical cord tissue; low gestational age
Organism Homo sapiens
Characteristics 25 weeks male
Extracted molecule total RNA
Extraction protocol initial step used Trizol extraction of RNA, following manufacturer's recommended protocols, followed by Qiagen RNeasy Mini Kit per manufacturer's recommended protocols
Label biotin
Label protocol GeneChip® One-Cycle Target Labeling and Control Reagents according to the manufacturer's recommended protocols
 
Hybridization protocol Affymetrix Hybridization Oven 640 and GeneChip® Fluidics Station 450 according to the manufacturer's recommended protocols
Scan protocol Affymetrix GeneChip® Scanner 3000 according to the manufacturer's recommended protocols
Description low gestational age
Data processing MAS_5.0 scaled to 1500
 
Submission date Jul 25, 2007
Last update date Aug 28, 2018
Contact name Jennifer N Cohen
E-mail(s) [email protected]
Phone 6177328263
Organization name Brigham and Women's Hospital
Department Newborn Medicine
Street address 75 Francis Street
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL570
Series (1)
GSE8586 Expression profiles of extremely low gestational age newborns as predictors of BPD
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS_5.0 value
ABS_CALL

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 9024.6 P
AFFX-BioB-M_at 16564.9 P
AFFX-BioB-3_at 5111.4 P
AFFX-BioC-5_at 26777.7 P
AFFX-BioC-3_at 33593.4 P
AFFX-BioDn-5_at 46263.3 P
AFFX-BioDn-3_at 174466.8 P
AFFX-CreX-5_at 459358.3 P
AFFX-CreX-3_at 445610.5 P
AFFX-DapX-5_at 74 A
AFFX-DapX-M_at 132.2 A
AFFX-DapX-3_at 29 A
AFFX-LysX-5_at 551.3 M
AFFX-LysX-M_at 498.8 A
AFFX-LysX-3_at 255.4 A
AFFX-PheX-5_at 71.1 A
AFFX-PheX-M_at 31.3 A
AFFX-PheX-3_at 153.2 A
AFFX-ThrX-5_at 266.5 A
AFFX-ThrX-M_at 87 A

Total number of rows: 54675

Table truncated, full table size 1013 Kbytes.




Supplementary file Size Download File type/resource
GSM213095.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap