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Sample GSM213097 Query DataSets for GSM213097
Status Public on Jul 26, 2007
Title umbilical cord_nobpd: 5F
Sample type RNA
 
Source name umbilical cord tissue; high gestational age
Organism Homo sapiens
Characteristics 27 weeks female
Extracted molecule total RNA
Extraction protocol initial step used Trizol extraction of RNA, following manufacturer's recommended protocols, followed by Qiagen RNeasy Mini Kit per manufacturer's recommended protocols
Label biotin
Label protocol GeneChip® One-Cycle Target Labeling and Control Reagents according to the manufacturer's recommended protocols
 
Hybridization protocol Affymetrix Hybridization Oven 640 and GeneChip® Fluidics Station 450 according to the manufacturer's recommended protocols
Scan protocol Affymetrix GeneChip® Scanner 3000 according to the manufacturer's recommended protocols
Description high gestational age
Data processing MAS_5.0 scaled to 1500
 
Submission date Jul 25, 2007
Last update date Aug 28, 2018
Contact name Jennifer N Cohen
E-mail(s) [email protected]
Phone 6177328263
Organization name Brigham and Women's Hospital
Department Newborn Medicine
Street address 75 Francis Street
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL570
Series (1)
GSE8586 Expression profiles of extremely low gestational age newborns as predictors of BPD
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS_5.0 value
ABS_CALL

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 9354.5 P
AFFX-BioB-M_at 15917.1 P
AFFX-BioB-3_at 6600.7 P
AFFX-BioC-5_at 27679.5 P
AFFX-BioC-3_at 38615.1 P
AFFX-BioDn-5_at 49907.5 P
AFFX-BioDn-3_at 153503.3 P
AFFX-CreX-5_at 299446 P
AFFX-CreX-3_at 321627.1 P
AFFX-DapX-5_at 329.4 A
AFFX-DapX-M_at 394.4 A
AFFX-DapX-3_at 30.8 A
AFFX-LysX-5_at 43.2 A
AFFX-LysX-M_at 63.8 A
AFFX-LysX-3_at 91.1 A
AFFX-PheX-5_at 63.5 A
AFFX-PheX-M_at 285.5 A
AFFX-PheX-3_at 126.9 A
AFFX-ThrX-5_at 53.5 A
AFFX-ThrX-M_at 18.8 A

Total number of rows: 54675

Table truncated, full table size 1006 Kbytes.




Supplementary file Size Download File type/resource
GSM213097.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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