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Sample GSM213115 Query DataSets for GSM213115
Status Public on Jul 26, 2007
Title umbilical cord_bpd: 9I
Sample type RNA
 
Source name umbilical cord tissue; low gestational age
Organism Homo sapiens
Characteristics 23 weeks male
Extracted molecule total RNA
Extraction protocol initial step used Trizol extraction of RNA, following manufacturer's recommended protocols, followed by Qiagen RNeasy Mini Kit per manufacturer's recommended protocols
Label biotin
Label protocol GeneChip® One-Cycle Target Labeling and Control Reagents according to the manufacturer's recommended protocols
 
Hybridization protocol Affymetrix Hybridization Oven 640 and GeneChip® Fluidics Station 450 according to the manufacturer's recommended protocols
Scan protocol Affymetrix GeneChip® Scanner 3000 according to the manufacturer's recommended protocols
Description low gestational age
Data processing MAS_5.0 scaled to 1500
 
Submission date Jul 25, 2007
Last update date Aug 28, 2018
Contact name Jennifer N Cohen
E-mail(s) [email protected]
Phone 6177328263
Organization name Brigham and Women's Hospital
Department Newborn Medicine
Street address 75 Francis Street
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL570
Series (1)
GSE8586 Expression profiles of extremely low gestational age newborns as predictors of BPD
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS_5.0 value
ABS_CALL

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 4624.5 P
AFFX-BioB-M_at 7231 P
AFFX-BioB-3_at 3360.1 P
AFFX-BioC-5_at 15655 P
AFFX-BioC-3_at 21268.5 P
AFFX-BioDn-5_at 23640.2 P
AFFX-BioDn-3_at 105201.1 P
AFFX-CreX-5_at 223254.8 P
AFFX-CreX-3_at 245478.3 P
AFFX-DapX-5_at 105.6 A
AFFX-DapX-M_at 261.6 A
AFFX-DapX-3_at 29.5 A
AFFX-LysX-5_at 68.3 A
AFFX-LysX-M_at 285.5 A
AFFX-LysX-3_at 28.3 A
AFFX-PheX-5_at 39.3 A
AFFX-PheX-M_at 25.3 A
AFFX-PheX-3_at 88.9 A
AFFX-ThrX-5_at 222 A
AFFX-ThrX-M_at 88.1 A

Total number of rows: 54675

Table truncated, full table size 1006 Kbytes.




Supplementary file Size Download File type/resource
GSM213115.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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