|
| Status |
Public on Jun 14, 2016 |
| Title |
DMSO24h_1_s3_ctrl |
| Sample type |
SRA |
| |
|
| Source name |
T47D breast cancer cells
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: T47D
treatment: DMSO
|
| Treatment protocol |
The medium was changed to medium containing either MK2206 or DMSO for 24 hours.
|
| Growth protocol |
Cells were maintained at 37oC and 5% CO2 in RPMI or DMEM + 10% FBS and Pen-Strep.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted using RNeasy
Libraries were made from total RNA using the Illumina TruSeq Stranded mRNA Library Prep Kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
Basecalls were performed with FastQC version 0.10.0.
RNA-seq reads were aligned to the hg19 genome assembly using Tophat
Genome_build: hg19
|
| |
|
| Submission date |
Apr 22, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Koen M.A. Dreijerink |
| E-mail(s) |
[email protected]
|
| Organization name |
Dana-Farber Cancer Institute
|
| Department |
Medical Oncology
|
| Street address |
450 Brookline Avenue
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02215 |
| Country |
USA |
| |
|
| Platform ID |
GPL18573 |
| Series (2) |
| GSE80591 |
Messenger RNA expression after MK2206/DMSO treatment of T47D cells |
| GSE80594 |
PI3K/AKT signaling regulates H3K4 methylation in breast cancer |
|
| Relations |
| BioSample |
SAMN04886745 |
| SRA |
SRX1721561 |
