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Sample GSM213121 Query DataSets for GSM213121
Status Public on Jul 26, 2007
Title umbilical cord_nobpd: 7I
Sample type RNA
 
Source name umbilical cord tissue; high gestational age
Organism Homo sapiens
Characteristics 27 weeks female
Extracted molecule total RNA
Extraction protocol initial step used Trizol extraction of RNA, following manufacturer's recommended protocols, followed by Qiagen RNeasy Mini Kit per manufacturer's recommended protocols
Label biotin
Label protocol GeneChip® One-Cycle Target Labeling and Control Reagents according to the manufacturer's recommended protocols
 
Hybridization protocol Affymetrix Hybridization Oven 640 and GeneChip® Fluidics Station 450 according to the manufacturer's recommended protocols
Scan protocol Affymetrix GeneChip® Scanner 3000 according to the manufacturer's recommended protocols
Description high gestational age
Data processing MAS_5.0 scaled to 1500
 
Submission date Jul 25, 2007
Last update date Aug 28, 2018
Contact name Jennifer N Cohen
E-mail(s) [email protected]
Phone 6177328263
Organization name Brigham and Women's Hospital
Department Newborn Medicine
Street address 75 Francis Street
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL570
Series (1)
GSE8586 Expression profiles of extremely low gestational age newborns as predictors of BPD
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS_5.0 value
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 4832 P 0.000754
AFFX-BioB-M_at 9468.5 P 0.00007
AFFX-BioB-3_at 2871.6 P 0.000662
AFFX-BioC-5_at 14470.1 P 0.000052
AFFX-BioC-3_at 18661.8 P 0.00007
AFFX-BioDn-5_at 21655.6 P 0.000044
AFFX-BioDn-3_at 105555.1 P 0.000095
AFFX-CreX-5_at 221677 P 0.000052
AFFX-CreX-3_at 262221.5 P 0.000044
AFFX-DapX-5_at 272.9 A 0.239063
AFFX-DapX-M_at 482 A 0.382599
AFFX-DapX-3_at 26.7 A 0.997133
AFFX-LysX-5_at 73.9 A 0.327079
AFFX-LysX-M_at 428.1 A 0.58862
AFFX-LysX-3_at 502.2 A 0.147939
AFFX-PheX-5_at 329.6 A 0.5
AFFX-PheX-M_at 188.4 A 0.659339
AFFX-PheX-3_at 449.7 A 0.58862
AFFX-ThrX-5_at 40.2 A 0.973889
AFFX-ThrX-M_at 255.9 A 0.39692

Total number of rows: 54675

Table truncated, full table size 1478 Kbytes.




Supplementary file Size Download File type/resource
GSM213121.CEL.gz 4.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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