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Sample GSM213123 Query DataSets for GSM213123
Status Public on Jul 26, 2007
Title umbilical cord_nobpd: 8C
Sample type RNA
 
Source name umbilical cord tissue; high gestational age
Organism Homo sapiens
Characteristics 27 weeks male
Extracted molecule total RNA
Extraction protocol initial step used Trizol extraction of RNA, following manufacturer's recommended protocols, followed by Qiagen RNeasy Mini Kit per manufacturer's recommended protocols
Label biotin
Label protocol GeneChip® One-Cycle Target Labeling and Control Reagents according to the manufacturer's recommended protocols
 
Hybridization protocol Affymetrix Hybridization Oven 640 and GeneChip® Fluidics Station 450 according to the manufacturer's recommended protocols
Scan protocol Affymetrix GeneChip® Scanner 3000 according to the manufacturer's recommended protocols
Description high gestational age
Data processing MAS_5.0 scaled to 1500
 
Submission date Jul 25, 2007
Last update date Aug 28, 2018
Contact name Jennifer N Cohen
E-mail(s) [email protected]
Phone 6177328263
Organization name Brigham and Women's Hospital
Department Newborn Medicine
Street address 75 Francis Street
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL570
Series (1)
GSE8586 Expression profiles of extremely low gestational age newborns as predictors of BPD
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS_5.0 value
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 5561.4 P 0.000754
AFFX-BioB-M_at 11034.8 P 0.000052
AFFX-BioB-3_at 3804.9 P 0.00007
AFFX-BioC-5_at 18013.8 P 0.000052
AFFX-BioC-3_at 24554.9 P 0.000044
AFFX-BioDn-5_at 30224.2 P 0.000044
AFFX-BioDn-3_at 115030 P 0.000044
AFFX-CreX-5_at 253561.8 P 0.000052
AFFX-CreX-3_at 273660.2 P 0.000044
AFFX-DapX-5_at 106.7 A 0.340661
AFFX-DapX-M_at 290.5 A 0.205732
AFFX-DapX-3_at 358.8 A 0.794268
AFFX-LysX-5_at 28.3 A 0.949771
AFFX-LysX-M_at 31.5 A 0.949771
AFFX-LysX-3_at 261.7 A 0.327065
AFFX-PheX-5_at 187.6 A 0.470241
AFFX-PheX-M_at 57.4 A 0.783476
AFFX-PheX-3_at 75.2 A 0.949771
AFFX-ThrX-5_at 85.1 A 0.760937
AFFX-ThrX-M_at 144.2 A 0.672921

Total number of rows: 54675

Table truncated, full table size 1473 Kbytes.




Supplementary file Size Download File type/resource
GSM213123.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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