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Sample GSM2131888 Query DataSets for GSM2131888
Status Public on Jul 26, 2016
Title NKTL-JS1
Sample type RNA
 
Source name NKTL Cell Line
Organism Homo sapiens
Characteristics disease: extranodal NK/T cell lymphoma (NKTL)
Extracted molecule total RNA
Extraction protocol For FFPE tissues, total RNA was extracted using High Pure RNA Paraffin Kit (Roche Applied Science, Mannheim, Germany) according to the manufacturer's instruction. For freshly isolated cells, total RNA was extracted using miRNeasy Mini Kit (Qiagen GmbH, Hilden, Germany) with DNase I treatment protocol by the manufacturer's instruction.
Label Cy3
Label protocol Illumina DASL protocol
 
Hybridization protocol Illumina DASL protocol
Scan protocol not provided
Description Illumina DASL protocol
71067A
NKTL Cell Line
Data processing Illumina BeadStudio version 3.3.8. No normalization was performed. Raw data were analyzed and used to draw conclusions.
 
Submission date Apr 25, 2016
Last update date Jul 26, 2016
Contact name Siok-Bian Ng
E-mail(s) [email protected]
Organization name National University Health System, Singapore
Department Department of Pathology
Street address National University Hospital, 5 Lower Kent Ridge Road, Main Building, level 3
City Singapore
ZIP/Postal code 119074
Country Singapore
 
Platform ID GPL6883
Series (2)
GSE80629 Gene expression of extranodal NK/T cell lymphoma I
GSE80632 Gene expression of extranodal NK/T cell lymphoma

Data table header descriptions
ID_REF
VALUE non-normalized average intensity of beads
Detection P-val

Data table
ID_REF VALUE Detection P-val
ILMN_1762337 1400.1 1
ILMN_2055271 177.6 0.95793
ILMN_2383229 62 0.33981
ILMN_1806310 75.2 0.59871
ILMN_1779670 71.2 0.52104
ILMN_2321282 95.7 0.8479
ILMN_1772582 81.5 0.68932
ILMN_1717783 95.2 0.8479
ILMN_1814316 121.1 0.91586
ILMN_2359168 117.3 0.90939
ILMN_1731507 50.2 0.11327
ILMN_1787689 106.9 0.88026
ILMN_1745607 47.3 0.05502
ILMN_2136495 50.7 0.12298
ILMN_1668111 55.2 0.21359
ILMN_2295559 55.9 0.22006
ILMN_1735045 69.7 0.49515
ILMN_1680754 82.3 0.69579
ILMN_2375184 109.1 0.8932
ILMN_1659452 113.5 0.89968

Total number of rows: 24526

Table truncated, full table size 572 Kbytes.




Supplementary data files not provided
Processed data not provided for this record

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