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Sample GSM2131889 Query DataSets for GSM2131889
Status Public on Jul 26, 2016
Title NKTL-JS2
Sample type RNA
 
Source name NKTL Cell Line
Organism Homo sapiens
Characteristics disease: extranodal NK/T cell lymphoma (NKTL)
Extracted molecule total RNA
Extraction protocol For FFPE tissues, total RNA was extracted using High Pure RNA Paraffin Kit (Roche Applied Science, Mannheim, Germany) according to the manufacturer's instruction. For freshly isolated cells, total RNA was extracted using miRNeasy Mini Kit (Qiagen GmbH, Hilden, Germany) with DNase I treatment protocol by the manufacturer's instruction.
Label Cy3
Label protocol Illumina DASL protocol
 
Hybridization protocol Illumina DASL protocol
Scan protocol not provided
Description Illumina DASL protocol
71067B
NKTL Cell Line
Data processing Illumina BeadStudio version 3.3.8. No normalization was performed. Raw data were analyzed and used to draw conclusions.
 
Submission date Apr 25, 2016
Last update date Jul 26, 2016
Contact name Siok-Bian Ng
E-mail(s) [email protected]
Organization name National University Health System, Singapore
Department Department of Pathology
Street address National University Hospital, 5 Lower Kent Ridge Road, Main Building, level 3
City Singapore
ZIP/Postal code 119074
Country Singapore
 
Platform ID GPL6883
Series (2)
GSE80629 Gene expression of extranodal NK/T cell lymphoma I
GSE80632 Gene expression of extranodal NK/T cell lymphoma

Data table header descriptions
ID_REF
VALUE non-normalized average intensity of beads
Detection P-val

Data table
ID_REF VALUE Detection P-val
ILMN_1762337 490.9 1
ILMN_2055271 150.8 0.95146
ILMN_2383229 71.7 0.51133
ILMN_1806310 67.4 0.40129
ILMN_1779670 72.5 0.5178
ILMN_2321282 96.3 0.83819
ILMN_1772582 89 0.76699
ILMN_1717783 82.6 0.68285
ILMN_1814316 91.5 0.79935
ILMN_2359168 104.8 0.88673
ILMN_1731507 50.3 0.05825
ILMN_1787689 99.2 0.87055
ILMN_1745607 61.8 0.28155
ILMN_2136495 57.5 0.20388
ILMN_1668111 55.8 0.16505
ILMN_2295559 57.5 0.20388
ILMN_1735045 68.8 0.43042
ILMN_1680754 90 0.78317
ILMN_2375184 107.4 0.89968
ILMN_1659452 122.5 0.92557

Total number of rows: 24526

Table truncated, full table size 574 Kbytes.




Supplementary data files not provided
Processed data not provided for this record

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