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Sample GSM2131891 Query DataSets for GSM2131891
Status Public on Jul 26, 2016
Title NKTL-JS4
Sample type RNA
 
Source name NKTL Patient
Organism Homo sapiens
Characteristics disease: extranodal NK/T cell lymphoma (NKTL)
Extracted molecule total RNA
Extraction protocol For FFPE tissues, total RNA was extracted using High Pure RNA Paraffin Kit (Roche Applied Science, Mannheim, Germany) according to the manufacturer's instruction. For freshly isolated cells, total RNA was extracted using miRNeasy Mini Kit (Qiagen GmbH, Hilden, Germany) with DNase I treatment protocol by the manufacturer's instruction.
Label Cy3
Label protocol Illumina DASL protocol
 
Hybridization protocol Illumina DASL protocol
Scan protocol not provided
Description Illumina DASL protocol
71067D
NKTL Patient
Data processing Illumina BeadStudio version 3.3.8. No normalization was performed. Raw data were analyzed and used to draw conclusions.
 
Submission date Apr 25, 2016
Last update date Jul 26, 2016
Contact name Siok-Bian Ng
E-mail(s) [email protected]
Organization name National University Health System, Singapore
Department Department of Pathology
Street address National University Hospital, 5 Lower Kent Ridge Road, Main Building, level 3
City Singapore
ZIP/Postal code 119074
Country Singapore
 
Platform ID GPL6883
Series (2)
GSE80629 Gene expression of extranodal NK/T cell lymphoma I
GSE80632 Gene expression of extranodal NK/T cell lymphoma

Data table header descriptions
ID_REF
VALUE non-normalized average intensity of beads
Detection P-val

Data table
ID_REF VALUE Detection P-val
ILMN_1762337 810.3 1
ILMN_2055271 362.7 0.99676
ILMN_2383229 55.1 0.26214
ILMN_1806310 62.6 0.48867
ILMN_1779670 69.3 0.64725
ILMN_2321282 123.3 0.96764
ILMN_1772582 80.7 0.83819
ILMN_1717783 64.2 0.52104
ILMN_1814316 59.3 0.3754
ILMN_2359168 67.5 0.61165
ILMN_1731507 49.1 0.0712
ILMN_1787689 80.6 0.83172
ILMN_1745607 1622.9 1
ILMN_2136495 51.8 0.13269
ILMN_1668111 55 0.2589
ILMN_2295559 54.4 0.23301
ILMN_1735045 2240.8 1
ILMN_1680754 77.7 0.78641
ILMN_2375184 81.3 0.84142
ILMN_1659452 88.1 0.89644

Total number of rows: 24526

Table truncated, full table size 581 Kbytes.




Supplementary data files not provided
Processed data not provided for this record

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