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Sample GSM2131892 Query DataSets for GSM2131892
Status Public on Jul 26, 2016
Title NKTL-JS7
Sample type RNA
 
Source name NKTL Patient
Organism Homo sapiens
Characteristics disease: extranodal NK/T cell lymphoma (NKTL)
Extracted molecule total RNA
Extraction protocol For FFPE tissues, total RNA was extracted using High Pure RNA Paraffin Kit (Roche Applied Science, Mannheim, Germany) according to the manufacturer's instruction. For freshly isolated cells, total RNA was extracted using miRNeasy Mini Kit (Qiagen GmbH, Hilden, Germany) with DNase I treatment protocol by the manufacturer's instruction.
Label Cy3
Label protocol Illumina DASL protocol
 
Hybridization protocol Illumina DASL protocol
Scan protocol not provided
Description Illumina DASL protocol
71067G
NKTL Patient
Data processing Illumina BeadStudio version 3.3.8. No normalization was performed. Raw data were analyzed and used to draw conclusions.
 
Submission date Apr 25, 2016
Last update date Jul 26, 2016
Contact name Siok-Bian Ng
E-mail(s) [email protected]
Organization name National University Health System, Singapore
Department Department of Pathology
Street address National University Hospital, 5 Lower Kent Ridge Road, Main Building, level 3
City Singapore
ZIP/Postal code 119074
Country Singapore
 
Platform ID GPL6883
Series (2)
GSE80629 Gene expression of extranodal NK/T cell lymphoma I
GSE80632 Gene expression of extranodal NK/T cell lymphoma

Data table header descriptions
ID_REF
VALUE non-normalized average intensity of beads
Detection P-val

Data table
ID_REF VALUE Detection P-val
ILMN_1762337 515.7 1
ILMN_2055271 190.5 0.98058
ILMN_2383229 462.5 1
ILMN_1806310 3985.4 1
ILMN_1779670 83.8 0.85113
ILMN_2321282 106.9 0.93204
ILMN_1772582 79.1 0.80259
ILMN_1717783 62.8 0.48544
ILMN_1814316 60.2 0.43689
ILMN_2359168 61.4 0.45955
ILMN_1731507 42.6 0.01295
ILMN_1787689 88.2 0.88026
ILMN_1745607 6066.8 1
ILMN_2136495 44.1 0.01295
ILMN_1668111 48.5 0.09385
ILMN_2295559 52.5 0.22977
ILMN_1735045 2091.8 1
ILMN_1680754 74.9 0.7411
ILMN_2375184 97.8 0.90615
ILMN_1659452 100.7 0.91909

Total number of rows: 24526

Table truncated, full table size 561 Kbytes.




Supplementary data files not provided
Processed data not provided for this record

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