NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2131893 Query DataSets for GSM2131893
Status Public on Jul 26, 2016
Title NKTL-JS8
Sample type RNA
 
Source name NKTL Patient
Organism Homo sapiens
Characteristics disease: extranodal NK/T cell lymphoma (NKTL)
Extracted molecule total RNA
Extraction protocol For FFPE tissues, total RNA was extracted using High Pure RNA Paraffin Kit (Roche Applied Science, Mannheim, Germany) according to the manufacturer's instruction. For freshly isolated cells, total RNA was extracted using miRNeasy Mini Kit (Qiagen GmbH, Hilden, Germany) with DNase I treatment protocol by the manufacturer's instruction.
Label Cy3
Label protocol Illumina DASL protocol
 
Hybridization protocol Illumina DASL protocol
Scan protocol not provided
Description Illumina DASL protocol
71067H
NKTL Patient
Data processing Illumina BeadStudio version 3.3.8. No normalization was performed. Raw data were analyzed and used to draw conclusions.
 
Submission date Apr 25, 2016
Last update date Jul 26, 2016
Contact name Siok-Bian Ng
E-mail(s) [email protected]
Organization name National University Health System, Singapore
Department Department of Pathology
Street address National University Hospital, 5 Lower Kent Ridge Road, Main Building, level 3
City Singapore
ZIP/Postal code 119074
Country Singapore
 
Platform ID GPL6883
Series (2)
GSE80629 Gene expression of extranodal NK/T cell lymphoma I
GSE80632 Gene expression of extranodal NK/T cell lymphoma

Data table header descriptions
ID_REF
VALUE non-normalized average intensity of beads
Detection P-val

Data table
ID_REF VALUE Detection P-val
ILMN_1762337 406.1 1
ILMN_2055271 171.6 0.97087
ILMN_2383229 63.2 0.47896
ILMN_1806310 72.5 0.68285
ILMN_1779670 66.6 0.56958
ILMN_2321282 104.4 0.92557
ILMN_1772582 80.2 0.78964
ILMN_1717783 78 0.77346
ILMN_1814316 65.1 0.53398
ILMN_2359168 65 0.53398
ILMN_1731507 43.6 0.00971
ILMN_1787689 95.9 0.89968
ILMN_1745607 9778.7 1
ILMN_2136495 179.5 0.97411
ILMN_1668111 47.7 0.05825
ILMN_2295559 53.4 0.1877
ILMN_1735045 3865.1 1
ILMN_1680754 76.3 0.76052
ILMN_2375184 79.8 0.78641
ILMN_1659452 97.8 0.90939

Total number of rows: 24526

Table truncated, full table size 564 Kbytes.




Supplementary data files not provided
Processed data not provided for this record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap