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Sample GSM213441 Query DataSets for GSM213441
Status Public on Jul 25, 2008
Title Barley seeds control in Hoagland solution for 12hr
Sample type RNA
 
Source name Barley seeds control in Hoagland solution for 12hr
Organism Hordeum vulgare
Characteristics barley seeds RNA was extracted after 12hr imbibition in Hoagland solution at 25C
Extracted molecule total RNA
Extraction protocol Total RNA was extracted by SDS-phenol method, and then purified with a Qiagen RNeasy Mini Kit.
Label Biotin
Label protocol Standard protocol, available from the following website,
http://www.affymetrix.com/support/technical/manual/expression_manual.affx
 
Hybridization protocol Standard protocol, available from the following website,
http://www.affymetrix.com/support/technical/manual/expression_manual.affx
Scan protocol Standard protocol, available from the following website,
http://www.affymetrix.com/support/technical/manual/expression_manual.affx
Description barley seeds RNA was extracted after 12hr imbibition in Hoagland solution at 25C
Data processing MAS 5.0 Expression Analysis Default Setting
 
Submission date Jul 26, 2007
Last update date Aug 14, 2011
Contact name Akihiro Ueda
E-mail(s) [email protected]
Phone 979-845-1744
Fax 979-845-6446
Organization name Texas A&M University
Department Chemical Engineering
Street address 3122 TAMU
City College Station
State/province TX
ZIP/Postal code 77843-3122
Country USA
 
Platform ID GPL1340
Series (1)
GSE8618 P. aeruginosa virulent factor to barley

Data table header descriptions
ID_REF
Barley1-Control Stat Pairs Number of perfect match probes for the probeset
Barley1-Control Stat Pairs Used Number of the mismatch probes for the probeset
VALUE Signal intensity accepted from the probeset
ABS_CALL Probeset signal: absent or present
DETECTION P-VALUE Probeset signal: p-value (shows the coherency of the results)

Data table
ID_REF Barley1-Control Stat Pairs Barley1-Control Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 362.6 P 0.003595
AFFX-BioB-M_at 20 20 179.5 P 0.010317
AFFX-BioB-3_at 20 20 178.9 P 0.000754
AFFX-BioC-5_at 20 20 214.8 P 0.000662
AFFX-BioC-3_at 20 20 144 P 0.00141
AFFX-BioDn-5_at 20 20 1259.1 P 0.00006
AFFX-BioDn-3_at 20 20 2773.3 P 0.000169
AFFX-CreX-5_at 20 20 8284.3 P 0.000044
AFFX-CreX-3_at 20 20 10918.2 P 0.000044
AFFX-DapX-5_at 20 20 391.4 P 0.00006
AFFX-DapX-M_at 20 20 995.3 P 0.000446
AFFX-DapX-3_at 20 20 1842.5 P 0.00006
AFFX-LysX-5_at 20 20 72.6 P 0.000754
AFFX-LysX-M_at 20 20 229.2 P 0.028457
AFFX-LysX-3_at 20 20 152.7 P 0.000258
AFFX-PheX-5_at 20 20 124 P 0.001102
AFFX-PheX-M_at 20 20 103.7 P 0.002275
AFFX-PheX-3_at 20 20 285.6 P 0.000147
AFFX-ThrX-5_at 20 20 174.1 P 0.002867
AFFX-ThrX-M_at 20 20 242.2 P 0.000195

Total number of rows: 22840

Table truncated, full table size 837 Kbytes.




Supplementary file Size Download File type/resource
GSM213441.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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