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Sample GSM2168 Query DataSets for GSM2168
Status Public on Jun 27, 2002
Title Serum cyc 0
Sample type RNA
 
Channel 1
Source name T=0
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name serum starved + cycloheximide (2 hours)
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Serum-response
Subcategory: Fibroblasts
Scanning Software: unknown
Software version: unknown
Lot batch = 319
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL169
Series (2)
GSE56 Serum stimulation of fibroblasts with cycloheximide
GSE58 Serum stimulation of fibroblasts

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 877 117 567 92 475 510 99 609 .01 0 -.241 0 0 1.272 1.182 .786 .846 .01 28 36 78 86 -.241
2 874 105 568 76 492 529 81 610 .19 0 -.374 0 0 1.382 1.296 .724 .771 .26 28 36 86 94 -.374
3 887 96 549 72 477 512 78 590 .07 0 -.3 0 0 1.333 1.231 .75 .813 .11 28 36 95 103 -.3
4 883 95 563 62 501 538 67 605 .13 0 -.504 0 0 1.532 1.418 .653 .705 .21 28 36 103 111 -.504
5 906 78 565 66 499 536 71 607 0 -.136 0 0 1.182 1.099 .846 .91 28 36 112 120 -.136
6 862 110 568 84 484 520 90 610 .24 0 -.29 0 0 1.31 1.222 .764 .818 .49 28 36 120 128 -.29
7 863 120 581 87 494 531 93 624 .27 0 -.368 0 0 1.379 1.29 .725 .775 .43 28 36 129 137 -.368
8 842 117 575 62 513 551 67 618 0 -.804 0 0 1.887 1.746 .53 .573 28 36 137 145 -.804
9 895 95 590 85 505 543 91 634 .01 0 -.062 0 0 1.118 1.044 .895 .958 .01 28 36 146 154 -.062
10 890 238 726 197 529 568 212 780 .85 0 -.167 0 0 1.208 1.123 .828 .891 .97 28 36 154 162 -.167
11 918 138 599 75 524 563 81 644 0 -.769 0 0 1.84 1.704 .543 .587 28 36 163 171 -.769
12 885 175 604 74 530 569 80 649 .32 0 -1.129 0 0 2.365 2.188 .423 .457 1.97 28 36 171 179 -1.129
13 878 128 619 87 532 572 93 665 .46 0 -.461 0 0 1.471 1.376 .68 .727 .67 28 36 180 188 -.461
14 892 122 616 68 548 589 73 662 0 -.741 0 0 1.794 1.671 .557 .598 28 36 188 196 -.741
15 922 153 692 146 546 587 157 744 .65 0 .037 0 0 1.048 .975 .954 1.026 .72 28 36 197 205 .037
16 881 121 626 83 543 583 90 673 .12 0 -.427 0 0 1.458 1.344 .686 .744 .18 28 36 205 213 -.427
17 861 103 618 66 552 593 71 664 .05 0 -.537 0 0 1.561 1.451 .641 .689 .1 28 36 214 222 -.537
18 879 91 645 88 557 598 95 693 .02 0 .062 0 0 1.034 .958 .967 1.044 .01 28 36 222 230 .062
19 872 99 609 80 529 568 86 654 .01 0 -.203 0 0 1.238 1.151 .808 .869 .01 28 36 231 239 -.203
20 867 107 623 74 549 590 79 669 0 -.438 0 0 1.446 1.354 .692 .738 28 36 239 247 -.438

Total number of rows: 9984

Table truncated, full table size 981 Kbytes.




Supplementary data files not provided
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